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Table 1 Summary of the sequencing and assembly of the G- and P-type B. vulgaris transcriptomes

From: Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative transcriptome analysis

Genotype

G-type

P-type

Treat

Control

Infested

Control

Infested

Clean reads

26,590,648

79,502,334

11,415,972

13,684,884

Clean nucleotides (Mb)

2,393

7,155

2,238

2,764

Unigene

39,531

33,721

Mean length (nt)

815

896

N50 length (nt)

1,175

1,440

All_Annotated/n (%)

37,780 (95.6 %)

31,715 (94.1 %)

nt_Annotation/n (%)

36,997 (93.6 %)

29,339 (87.0 %)

nr_Annotation/n (%)

36,133 (91.4 %)

28,819 (85.5 %)

Swissprot/n (%)

22,588 (57.1 %)

23,045 (68.3 %)

GO/n (%)

14,339 (36.4 %)

24,113 (71.5 %)

COG/n (%)

13,118 (33.2 %)

10,646 (31.6 %)

KEGG/n (%)

19,620 (49.6 %)

8,167 (24.2 %)

  1. GO, gene ontology; COG, clusters of orthologous groups; KEGG, Kyoto encyclopedia of gene and genomes
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BMC Genomics

ISSN: 1471-2164

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