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Table 1 Summary of the sequencing and assembly of the G- and P-type B. vulgaris transcriptomes

From: Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative transcriptome analysis

Genotype G-type P-type
Treat Control Infested Control Infested
Clean reads 26,590,648 79,502,334 11,415,972 13,684,884
Clean nucleotides (Mb) 2,393 7,155 2,238 2,764
Unigene 39,531 33,721
Mean length (nt) 815 896
N50 length (nt) 1,175 1,440
All_Annotated/n (%) 37,780 (95.6 %) 31,715 (94.1 %)
nt_Annotation/n (%) 36,997 (93.6 %) 29,339 (87.0 %)
nr_Annotation/n (%) 36,133 (91.4 %) 28,819 (85.5 %)
Swissprot/n (%) 22,588 (57.1 %) 23,045 (68.3 %)
GO/n (%) 14,339 (36.4 %) 24,113 (71.5 %)
COG/n (%) 13,118 (33.2 %) 10,646 (31.6 %)
KEGG/n (%) 19,620 (49.6 %) 8,167 (24.2 %)
  1. GO, gene ontology; COG, clusters of orthologous groups; KEGG, Kyoto encyclopedia of gene and genomes