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Table 6 Characteristics of the 30 analyzed simple sequence repeat (SSR) markers and the diversity detected in 32 Barbarea accessions

From: Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative transcriptome analysis

Marker

Motif

Primer sequence (5′to 3′)

MAF

GNo

ANo

GD

H

PIC

BV13-17

(TC)6

ACAGGAAGAATGAGAAGAGCT

0.76

3.00

2.00

0.37

0.06

0.30

  

TCTGTTTGTGGTTTTAATGGGC

      

BV13-18

(T)12

TCAATGAAGACTATTTGAGATGCT

0.97

2.00

2.00

0.06

0.00

0.06

  

CTTCAATAACTCCCTTACCAATGT

      

BV13-65

(TGT)4

TCCTGCTGCTACTGTTGTTG

0.79

2.00

2.00

0.33

0.00

0.28

  

TCAGAAACGGCATCCCTCTA

      

BV13-92

(T)13

TGCGAATCAATCTTTCATTTGT

0.55

3.00

2.00

0.50

0.30

0.37

  

TGTAGGTTTCTTTGGTTGCCA

      

BV13-98

(TTC)5

GGCTTCTTCTCCTTTTACTTCCT

0.42

6.00

4.00

0.69

0.45

0.64

  

GTGGACATGGTGGAAGGTTT

      

BV13-103

(TGA)5

AAGCCCTCCAAACCAAGATG

0.85

5.00

3.00

0.27

0.06

0.25

  

AAGCACAGATGATGCCAGAG

      

BV13-108

(TCC)5

GGCGGTGGTGGATCTTATTA

0.88

2.00

2.00

0.21

0.00

0.19

  

ATTTAGCACCACCACCTGAG

      

BV13-112

(TTG)4

TGGTTTCGAGATGGGTTTCT

0.61

4.00

3.00

0.54

0.25

0.48

  

ACCAATCCTCCAAGACAACA

      

BV13-123

(T)8

GGCTGTGCAATCCTGAGTAA

0.88

6.00

3.00

0.22

0.09

0.21

  

AGGAAGATGGATAATTTAAGCAGA

      

BV13-125

(T)9

TCCACGAATCTTGCTTCTTTCT

0.86

3.00

2.00

0.24

0.15

0.21

  

GACTATTTCTCTGTTGTTTTGAAGT

      

BV13-146

(GAA)5

GGAGTCCTTCTGTCACTTCC

0.58

3.00

2.00

0.49

0.24

0.37

  

CGTCATCGTCGGTGATACTC

      

BV13-174

(A)11

CGTTCAAGGCACATCAGAGT

0.44

8.00

6.00

0.71

0.33

0.66

  

TTCAAACACGGTAGTAGCGC

      

BV13-339

(GGC)6

GTTCTTCTGCCGACGGTAAG

0.79

3.00

3.00

0.36

0.00

0.33

  

GAGGAGGAGTTGAAGGCATG

      

BV13-370

(GAA)5

GCAATGTGAGGATCATCACG

0.89

3.00

2.00

0.19

0.15

0.17

  

AGTTGATGAAATCGCTGCAG

      

BV13-372

(TGA)6

TGGCTTGGTTTGGTAGATGA

0.44

4.00

5.00

0.69

0.59

0.64

  

GGTTTCTGCATCGACGAATG

      

BV13-375

(GCG)6

CGTTCAAGGCACATCAGAGT

0.47

7.00

5.00

0.68

0.33

0.63

  

TTCAAACACGGTAGTAGCGC

      

BV13-417

(G)10

AGCCCTCTTGAGAACATTAAGA

0.70

3.00

2.00

0.42

0.06

0.33

  

AAGTCTTTGTCTTTTGCTGC

      

BV13-425

(TC)7

TAGAGGACGACGGAGACAAC

0.71

6.00

3.00

0.45

0.33

0.41

  

TCATCATCAAAGGAGAATCGGA

      

BV13-426

(CT)8

GAAACCTACACAAATAACAGAATGT

0.52

7.00

4.00

0.65

0.33

0.60

  

GAACCGCATGTCTTAATTCGT

      

BV13-436

(A)11

ACGATCATTTTGAGGTTTGAGA

0.38

8.00

4.00

0.71

0.36

0.66

  

CTCTCTGGAATCACTGCACA

      

BV13-439

(A)10

CCAACACCGAACGCATAAGA

0.68

3.00

2.00

0.43

0.09

0.34

  

TCGCACTAATGTCTCCAACT

      

BV13-443

(CTC)5

CGTTCCTTTACCCACTCGTC

0.39

4.00

4.00

0.71

0.33

0.66

  

CGGTTTTAACAAGCTCGTCG

      

BV13-445

(TCTT)5

CACATAACTCAGAACCGGACA

0.45

4.00

4.00

0.67

0.27

0.62

  

TCCTCTGTTTCTCACTAAGTAGA

      

BV13-462

(T)11

CTGCACAGACGACTCTTTT

0.83

3.00

2.00

0.28

0.03

0.24

  

CCGATCCTCTTCTCCACCTT

      

BV13-485

(T)12

TCGGTTTTGTTGCTTCCCAT

0.79

2.00

2.00

0.33

0.00

0.28

  

TGCATTAGAGAGATTTCAAGTCC

      

BV13-509

(T)10

ACGAAGGAGAAAGAACTTGCA

0.79

5.00

3.00

0.35

0.21

0.32

  

TCTTTAGAGAGCAAGAAAGAGATAA

      

BV13-542

(CGA)6

CAGGTTTCGCTCAGAGGAAG

0.33

7.00

5.00

0.74

0.47

0.69

  

CTCTCGCGCTCTGAATCAAT

      

BV13-544

(TCC)5

ACGCCAGGATGAATCTCAAC

0.77

3.00

2.00

0.35

0.09

0.29

  

TTTCAGATTCGTCGCGGAAA

      

BV13-557

(CCA)5

TAGCTTCCTCATTCCCACCA

0.88

2.00

2.00

0.21

0.00

0.19

  

CCGTAATGAAACCTGGAGCA

      

BV13-558

(GA)8

AGAGAGAAAACGAGAGAGAGAGA

0.81

3.00

2.00

0.30

0.25

0.26

  

AAACATGGAACCAGCTTGCT

      

BV13-564

(GGT)6

GAGGGAACGTTGGTGGTT

0.50

5.00

3.00

0.56

0.27

0.47

  

ACGACGGCTGTTTACACTTT

      
  1. MAF, major allele frequency; GNo, genotype number; ANo, allele number; GD, gene diversity; H, heterozygosity; PIC, polymorphism information content.
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BMC Genomics

ISSN: 1471-2164

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