Skip to main content

Table 1 Samples list of Vitis vinifera cv Corvina and PN40024 clone, used for small RNA libraries

From: miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

Sample

Developmental stages

Replicates

Library codes

Modified E-L system stages

BUD

Latent bud

2

Bud_L

E-L 23

 

Winter Bud

2

Bud_W

E-L 1

 

Bud burst (green tip)

2

Bud_B

E-L 4

 

Bud after burst (Rosette of leaf tips visible)

2

Bud_AB

E-L 5

LEAF

Young

2

Leaf_Y

EL-14

 

Mature

2

Leaf_M

E-L 29

 

Leaf-Senescence

2

Leaf_S

E-L 43

STEM

Green stem

2

Stem_G

E-L 30

 

Woody stem

2

Stem_W

E-L 43

ROOT

In vitro cultivation

2

Root

 

TENDRIL

Young (Pool of tendrils from shoot bearing 7 separated leaves)

2

Tendril_Y

E-L 14

 

Well-developed (Pool of tendrils from shoot bearing 12 separated leaves)

2

Tendril_WD

E-L 17

INFLORESCENCE

Young inflorescence

2

Inflorescence_Y

E-L 14

 

Well-developed inflorescence

2

Inflorescence_WD

E-L 17

FLOWER

Beginning of flowering (10% caps off)

2

Flower_FB

E-L 20

 

Flowering (50% caps off)

2

Flower_F

E-L 23

STAMEN

Pool of stamens from flowers at 10% and 50% caps off

2

Stamen

E-L 20/E-L 23

POLLEN

Pollens from flowers at 80% caps off

2

Pollen

E-L 25

CARPEL

Pool of carpels from flowers at 10% and 50% caps off

2

Carpel

E-L 20/E-L 23

BERRY

Fruit set

2

Berry_FS

E-L 29

 

Post fruit set

2

Berry_PFS

E-L 31

 

Pre-Veraison

2

Berry_PV

E-L 34

 

Veraison

2

Berry_V

E-L 35

 

Pre-ripening

2

Berry_MR

E-L 36

 

Ripening

2

Berry_R

E-L 38

 

Post-harvest withering (1st month)

2

Berry_PHWI

 
 

Post-harvest withering (2nd month)

2

Berry_PHWII

 
 

Post-harvest withering (3rd month)

2

Berry_PHWIII

 

SEED

Collected from green berries (Pool of berries from FS, PFS, PV)

1

Seed_G

 
 

Collected from Mature berries (Pool of berries from V, MR, R)

1

Seed_M

 

RACHIS

Fruit set

2

Rachis_FS

E-L 29

 

Post -fruit set

2

Rachis_PFS

E-L 31

 

Veraison

2

Rachis_V

E-L 35

 

Pre-ripening

2

Rachis_MR

E-L 36

 

Ripening

2

Rachis_R

E-L 38

Total Corvina

35

68

  

ROOT

Pool of in vitro roots of PN40024 clone

1

Root_PN

 

LEAF

Pool of in vitro leaves of PN40024 clone

1

Leaf_PN

 

Total PN40024

2

2

  
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us