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Table 4 Positive predictive and negative predictive values at various prediction value cut-offs for the two all phenotype analyses

From: Assessing models for genetic prediction of complex traits: a comparison of visualization and quantitative methods

  Positive predictive values Negative predictive values
Prediction value cut-off p < 5E-08 hits all GWAS hits in catalogue p < 5E-08 hits all GWAS hits in catalogue
0.5 0.069 0.128 0.968 0.915
0.6 0.094 0.226 0.956 0.903
0.7 0.198 0.304 0.948 0.899