Table 3 Characteristics of the MAPKKK genes in cucumber
Gene name | Deduced polypeptide | Number of ESTs | Gene ID | Chromosome number | Location | Strand direction | Subcellular location | ||
|---|---|---|---|---|---|---|---|---|---|
Length | Molecular weight (kDa) | PI | |||||||
CsMAPKKK1 | 678 | 74.9 | 5.62 | 1P | Csa2M021750.1 | 2 | 2688606–2693210 | + | Nuclear |
CsMAPKKK3 | 632 | 67.3 | 9.14 | 9P | Csa6M483320.1 | 6 | 22175469–22179587 | - | Nuclear |
CsMAPKKK4-1 | 896 | 96.8 | 9.47 | 5P | Csa3M182770.1 | 3 | 12717187–12722466 | - | Nuclear |
CsMAPKKK4-2 | 889 | 96.0 | 9.38 | 0 | Csa5M166980.1 | 5 | 6401871–6406567 | + | Nuclear |
CsMAPKKK5-1 | 769 | 83.7 | 9.22 | 2P | Csa6M490220.1 | 6 | 23292023–23297308 | + | Nuclear |
CsMAPKKK5-2 | 704 | 77.3 | 9.07 | 0 | Csa2M360650.1 | 2 | 17054822–17058775 | - | Nuclear |
CsMAPKKK8 | 566 | 62.8 | 5.66 | 1P | Csa5M385380.1 | 5 | 14250357–14255268 | - | Nuclear |
CsMAPKKK12 | 636 | 70.3 | 6.43 | 1P | Csa6M425140.1 | 6 | 19885541–19890321 | - | Nuclear |
CsMAPKKK13 | 491 | 54.4 | 5.15 | 1P | Csa1M532310.1 | 1 | 18801570–18803045 | + | Chloroplast |
CsMAPKKK15 | 402 | 44.7 | 5.38 | 2P | Csa6M513560.1 | 6 | 26600235–26601519 | + | Cytoplasm, Nuclear, Chloroplast |
CsMAPKKK17-1 | 435 | 49.1 | 5.80 | 15P | Csa2M416770.1 | 2 | 21586777–21588084 | + | Cytoplasm, Nuclear |
CsMAPKKK17-2 | 372 | 41.9 | 4.82 | 0 | Csa7M043040.1 | 7 | 2351691–2352809 | + | Chloroplast |
CsMAPKKK20 | 336 | 37.4 | 9.18 | 0 | Csa7M430790.1 | 7 | 16849784–16851015 | - | Cytoplasm, Mitochondria |
CsMAPKKK21-1 | 350 | 38.9 | 4.99 | 17P | Csa6M490950.1 | 6 | 23482398–23483450 | + | Cytoplasm |
CsMAPKKK21-2 | 345 | 37.9 | 4.96 | 0 | Csa2M278170.1 | 2 | 13289977–13291014 | - | Chloroplast |
CsMAPKKK21-3 | 331 | 38.1 | 6.98 | 0 | Csa7M378450.1 | 7 | 13904002–13904997 | + | Cytoplasm, Nuclear |
CsMAPKKK21-4 | 353 | 40.5 | 6.24 | 0 | Csa7M407720.1 | 7 | 15756947–15758008 | + | Cytoplasm, Nuclear |
CsMAPKKK21-5 | 330 | 37.8 | 8.87 | 1P | Csa3M829110.1 | 3 | 33117599–33118591 | + | Cytoplasm, Nuclear |
CsRAF1-1 | 852 | 94.5 | 5.77 | 0 | Csa6M450400.1 | 6 | 21398481–21404987 | + | Cytoplasm, Nuclear |
CsRAF1-2 | 860 | 95.0 | 5.49 | 4P | Csa3M749850.1 | 3 | 29127779–29136084 | + | Nuclear |
CsRAF2 | 946 | 104.2 | 5.66 | 12P | Csa1M574260.1 | 1 | 21515696–21525432 | - | Cytoplasm, Nuclear |
CsRAF3 | 966 | 106.5 | 5.15 | 7P | Csa4M646020.1 | 4 | 21910209–21918810 | - | Cytoplasm, Nuclear |
CsRAF4 | 1011 | 110.3 | 5.51 | 5P | Csa1M042730.1 | 1 | 4465512–4476571 | + | Nuclear |
CsRAF6 | 902 | 100.0 | 6.56 | 2P | Csa3M892210.1 | 3 | 38100218–38108126 | - | Chloroplast, Nuclear |
CsRAF10 | 686 | 75.7 | 6.17 | 5P | Csa6M330990.1 | 6 | 15249399–15253602 | - | Cytoplasm, Nuclear |
CsRAF15 | 799 | 89.9 | 6.00 | 22P | Csa6M154510.1 | 6 | 10910852–10919554 | - | Nuclear |
CsRAF16 | 1162 | 129.7 | 5.40 | 1P | Csa3M133150.1 | 3 | 8680433–8685859 | - | Nuclear |
CsRAF18 | 1207 | 133.9 | 5.33 | 8P | Csa6M136540.1 | 6 | 9552953–9558532 | - | Nuclear |
CsRAF19–1 | 363 | 41.5 | 9.14 | 0 | Csa6M511830.1 | 6 | 26450395–26451769 | - | Nuclear |
CsRAF19-2 | 361 | 41.2 | 8.99 | 5P | Csa1M046040.1 | 1 | 5272153–5274259 | + | Plasma Membrane |
CsRAF22 | 413 | 46.7 | 6.90 | 52C | Csa2M070870.1 | 2 | 5495966–5503657 | - | Cytoplasm |
CsRAF24 | 1291 | 142.5 | 5.17 | 44P | Csa1M057040.1 | 1 | 6296180–6304520 | + | Nuclear |
CsRAF25 | 473 | 53.6 | 9.05 | 3P | Csa7M051390.1 | 7 | 3242880–3247120 | - | Nuclear, Mitochondria |
CsRAF27 | 458 | 51.7 | 6.61 | 1P | Csa1M467120.1 | 1 | 16725450–16729393 | - | Cytoplasm, Nuclear |
CsRAF29 | 542 | 61.8 | 6.57 | 23P | Csa3M002480.1 | 3 | 321724–328150 | - | Nuclear |
CsRAF30-1 | 536 | 60.1 | 5.85 | 11 | Csa7M017160.1 | 7 | 990917–998921 | - | Nuclear |
CsRAF30-2 | 555 | 62.5 | 5.46 | 8P | Csa6M058190.1 | 6 | 4524498–4538278 | + | Cytoplasm |
CsRAF31 | 373 | 42.0 | 9.31 | 1P | Csa3M728150.1 | 3 | 27247215–27250387 | - | Cytoplasm, Nuclear |
CsRAF34 | 353 | 39.8 | 7.16 | 0 | Csa1M003510.1 | 1 | 589408–591750 | + | Cytoplasm |
CsRAF35 | 1192 | 133.9 | 5.78 | 5P | Csa2M049880.1 | 2 | 4087262–4098054 | + | Nuclear |
CsRAF36-1 | 492 | 55.9 | 9.28 | 2P | Csa6M517390.1 | 6 | 27240673–27243011 | - | Mitochondria |
CsRAF36-2 | 476 | 54.3 | 9.44 | 2P | Csa1M074900.1 | 1 | 7637332–7639059 | - | Mitochondria |
CsRAF37 | 374 | 42.6 | 5.17 | 2P | Csa6M502000.1 | 6 | 25234973–25238101 | + | Cytoplasm, Nuclear, Plasma membrane |
CsRAF38 | 385 | 42.3 | 7.06 | 1P | Csa3M836460.1 | 3 | 33384154–33387500 | - | Cytoplasm, Nuclear |
CsRAF39-1 | 398 | 44.4 | 8.50 | 9P | Csa7M387170.1 | 7 | 14180645–14183905 | - | Cytoplasm, Nuclear, Chloroplast |
CsRAF39-2 | 387 | 43.1 | 8.37 | 25P | Csa3M146410.1 | 3 | 9774770–9777297 | - | Cytoplasm |
CsRAF41-1 | 352 | 39.5 | 8.73 | 9C | Csa3M840390.1 | 3 | 33755408–33757740 | + | Cytoplasm |
CsRAF41-2 | 353 | 39.3 | 6.61 | 2P | Csa5M523010.1 | 5 | 18399026–18401943 | - | Cytoplasm |
CsRAF47 | 882 | 101.2 | 9.38 | 31P | Csa6M520410.1 | 6 | 27781623–27798089 | + | Nuclear |
CsZIK1 | 598 | 69.3 | 5.51 | 0 | Csa4M332110.1 | 4 | 13437265–13441770 | - | Nuclear |
CsZIK2 | 645 | 72.9 | 6.52 | 2P | Csa6M212860.1 | 6 | 12899750–12903082 | + | Nuclear |
CsZIK4-1 | 732 | 83.6 | 5.34 | 12P | Csa2M012110.1 | 2 | 2162909–2166218 | + | Nuclear |
CsZIK4-2 | 740 | 84.2 | 4.88 | 3P | Csa7M234730.1 | 7 | 8351879–8354665 | - | Nuclear |
CsZIK4-3 | 610 | 70.1 | 5.65 | 0 | Csa1M695390.1 | 1 | 27876401–27879136 | + | Nuclear |
CsZIK5 | 733 | 82.3 | 5.41 | 1P | Csa3M119370.1 | 3 | 6656546–6660203 | - | Cytoplasm, Nuclear |
CsZIK6 | 691 | 76.5 | 5.18 | 17P | Csa5M148620.1 | 5 | 4317304–4320333 | - | Cytoplasm, Nuclear, Chloroplast |
CsZIK8-1 | 300 | 34.2 | 5.84 | 13C | Csa3M062560.1 | 3 | 3573880–3576131 | + | Nuclear |
CsZIK8-2 | 376 | 42.5 | 5.31 | 3P | Csa6M110320.1 | 6 | 7511957–7515007 | - | Nuclear |
CsZIK11 | 601 | 68.0 | 4.91 | 2P | Csa1M046910.1 | 1 | 5508743–5512465 | - | Nuclear |