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Table 1 This table summarizes the database content of CMRegNet

From: CMRegNet–An interspecies reference database for corynebacterial and mycobacterial regulatory networks

Organism Genes Reg TG TFBS CG MT Both NRs
C. aurimucosum ATCC 700975 2531 31 448 420 294 264 108 666
C. diphtheriae NCTC 13129 2272 37 379 470 270 68 210 548
C. efficiens YS-314 2950 44 601 537 443 262 248 953
C. glutamicum ATCC 13032 3058 94 723 452 1314 0 0 1314
C. glutamicum R 3052 51 724 773 638 282 312 1232
C. jeikeium K411 2104 25 418 440 212 156 223 591
C. kroppenstedtii DSM 44385 2018 24 399 321 199 114 279 591
C. pseudotuberculosis 1002 2057 31 408 339 285 91 239 615
C. pseudotuberculosis C231 2053 29 409 338 281 93 234 608
C. pseudotuberculosis FRC41 2110 30 437 355 303 93 250 646
C. urealyticum DSM 7109 2024 25 377 356 176 132 262 570
M. abscessus 4920 45 1374 1855 198 2156 541 2895
M. avium 104 5120 40 1489 2358 101 2676 467 3244
M. bovis BCG str. Pasteur 1173P2 3948 53 2195 4117 115 5209 407 5731
M. leprae Br4923 1604 17 450 335 107 326 208 641
M. marinum M 5423 44 1919 3805 121 4190 742 5053
M. smegmatis str. MC2 155 6717 50 1555 2299 266 2366 614 3246
M. tuberculosis F11 3941 52 1934 3988 106 4852 294 5252
M. tuberculosis H37Ra 4034 54 2380 4391 142 5654 498 6294
M. tuberculosis H37Rv 4003 40 1458 2466 0 2466 0 2466
  1. Legend: Genes = total number of genes; Reg = total number of regulatory genes; TG = number of target genes; TFBS = total number of binding sites; CG = number of regulations exclusively transferred from Corynebacterium glutamicum ATCC 13032; MT = number of regulations exclusively transferred from Mycobacterium tuberculosis H37Rv; Both = regulations predicted by both model organisms; NRs = total number of regulations