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Table 4 Identification, sequence similarity and Gene Ontology annotation statistics of peptide sequences in the transcriptome

From: De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

Description   Number of sequences Percentage of sequences (%)
Transcripts   212,427  
TransDecoder peptides   58,383  
Peptides with Swissprot/Uniprot annotation   41,108 70.41
GO annotated transcripts   53,766 25.31
GO annotated peptides   19,423 47.23
GO tree GO Count %
Cellular Component cytoplasm 2,122 10.9
  nucleus 1,955 10.1
  plasma membrane 1,272 6.6
  membrane 1,213 6.3
  cytosol 1,195 6.2
Molecular Function protein binding 2,577 13.3
  binding 1,071 5.5
  ATP binding 755 3.9
  metal ion binding 569 2.9
  protein homodimerization activity 485 2.5
Biological Process cellular process 597 3.1
  regulation of cellular process 539 2.8
  primary metabolic process 446 2.3
  response to stimulus 419 2.2
  transport 416 2.1