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Table 4 Identification, sequence similarity and Gene Ontology annotation statistics of peptide sequences in the transcriptome
| Description | Number of sequences | Percentage of sequences (%) | |
|---|---|---|---|
| Transcripts | 212,427 | ||
| TransDecoder peptides | 58,383 | ||
| Peptides with Swissprot/Uniprot annotation | 41,108 | 70.41 | |
| GO annotated transcripts | 53,766 | 25.31 | |
| GO annotated peptides | 19,423 | 47.23 | |
| GO tree | GO | Count | % |
| Cellular Component | cytoplasm | 2,122 | 10.9 |
| nucleus | 1,955 | 10.1 | |
| plasma membrane | 1,272 | 6.6 | |
| membrane | 1,213 | 6.3 | |
| cytosol | 1,195 | 6.2 | |
| Molecular Function | protein binding | 2,577 | 13.3 |
| binding | 1,071 | 5.5 | |
| ATP binding | 755 | 3.9 | |
| metal ion binding | 569 | 2.9 | |
| protein homodimerization activity | 485 | 2.5 | |
| Biological Process | cellular process | 597 | 3.1 |
| regulation of cellular process | 539 | 2.8 | |
| primary metabolic process | 446 | 2.3 | |
| response to stimulus | 419 | 2.2 | |
| transport | 416 | 2.1 |
