BMC Genomics

Table 5 Transposable element frequencies, classes, and methylation

From: DNA methylation and gene expression in Mimulus guttatus

		Percent Methylation
ID	Copies	CG	CHG	CHH	Family	Class
helB8c	2380	0.809	0.473	0.052	Helitron	2
MULE_MITE1c	674	0.627	0.263	0.102	MITE	2
Copia1b	424	0.780	0.437	0.058	Copia	1
helD8b	402	0.712	0.357	0.055	Helitron	2
MULE_MITE2b	245	0.633	0.285	0.077	MULE	2
pogo_MITE2b	203	0.738	0.281	0.071	MITE	2
MULE_MITE16b	200	0.713	0.207	0.070	MULE	2
hAT_MITE1	197	0.782	0.294	0.051	MITE	2
MULE_na62	165	0.768	0.359	0.064	MULE	2
MULE_MITE1a	158	0.720	0.250	0.071	MULE	2
LARD4	155	0.793	0.442	0.081	LARD	1
hAT_na66a	151	0.869	0.276	0.042	hAT	2
Tourist6c	151	0.634	0.259	0.071	MITE	2
MuDR8	150	0.791	0.492	0.089	MuDR	2
MULE_na13a	145	0.752	0.400	0.068	MULE	2
Copia1a	143	0.717	0.374	0.045	Copia	1
Copia2	137	0.685	0.494	0.085	Copia	1
SINE1a	134	0.685	0.293	0.112	SINE	1
Gypsy8	128	0.605	0.228	0.033	Gypsy	1
MULE_na13b	128	0.449	0.260	0.058	MULE	2
helF3c	119	0.737	0.362	0.067	Helitron	2
Jittery7	116	0.639	0.260	0.053	Mu	2
Toursit4c	115	0.781	0.315	0.085	MITE	2
Gypsy4	111	0.818	0.402	0.051	Gypsy	1
MULE_MITE25b	109	0.626	0.151	0.042	MULE	2

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