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Fig. 6 | BMC Genomics

Fig. 6

From: Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome

Fig. 6

Reconstruction quality of MIA genes in different assemblies. Current resources (A = ccOrcae (Smartcell), B = mpgrCra (Medicinal Plant Genomics Resource), C = NIPGR, D = PMS454 (PhytoMetaSyn), E = PMSIllu (PhytoMetaSyn) and new assemblies (19 SRR with PE sequencing design) were used as databases to identify homologs of MIA genes, and the resulting bitscore obtained by BLAST was compared to that of an ideal sequence (bitscore of the reference sequence against itself, i.e. bitscore ratio = 1)

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