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Table 3 Number of co-regulated genes in stress-exposed control and ΔatfA cultures

From: Core oxidative stress response in Aspergillus nidulans

Transcriptional changesa Stress exposuresb
MSB MSB tBOOH MSB tBOOH diamide MSB tBOOH diamide
+ h-H2O2
MSB tBOOH diamide
+ NaCl
MSB tBOOH diamide
+ h-H2O2 and NaCl
Allc
THS30.3 control strain        
Up-regulated genes        
>2x increases in 6 stresses        7
>2x increases in 5 stresses       51 88
>2x increases in 4 stresses     161 84 226 221
>2x increases in 3 stresses    393 414 503 535 523
>2x increases in 2 stresses   699 793 856 1031 1012 1004
>2x increase in 1 stress 1574 1542 2052 2018 2007 1925 1923
Sum: 1574 2241 3238 3449 3625 3749 3766
  MSB only tBOOH only Diamide only h-H2O2 only NaCl only   l-H2O2 only
>2x increases 1574 1366 1877 799 1097   153
Down-regulated genes        
>2x decreases in 6 stresses        6
>2x decreases in 5 stresses       65 84
>2x decreases in 4 stresses     103 194 278 300
>2x decreases in 3 stresses    480 530 544 543 580
>2x decreases in 2 stresses   786 960 1021 985 1031 1069
>2x decrease in 1 stress 1696 1563 1799 1904 1813 1852 1763
Sum: 1696 2349 3239 3558 3536 3769 3802
  MSB only tBOOH only Diamide only h-H2O2 only NaCl only   l-H2O2 only
>2x decreases 1696 1441 2022 789 1032   317
TNJ 92.4 ΔatfA strain        
Up-regulated genes        
>2x increases in 6 stresses        8
>2x increases in 5 stresses       39 63
>2x increases in 4 stresses     192 69 233 235
>2x increases in 3 stresses    289 331 379 387 399
>2x increases in 2 stresses   561 850 834 951 939 1006
>2x increase in 1 stress 1001 1781 2103 2104 2138 2141 2149
Sum: 1001 2342 3242 3461 3534 3739 3860
  MSB only tBOOH only Diamide only h-H2O2 only NaCl only   l-H2O2 only
>2x increases 1001 1902 1767 863 774   354
Down-regulated genes        
>2x decreases in 6 stresses        10
>2x decreases in 5 stresses       111 123
>2x decreases in 4 stresses     290 163 289 310
>2x decreases in 3 stresses    440 360 552 531 546
>2x decreases in 2 stresses   740 918 882 850 779 823
>2x decrease in 1 stress 1050 1354 1523 1510 1516 1497 1489
Sum: 1050 2094 2881 3042 3081 3207 3301
  MSB only tBOOH only Diamide only h-H2O2 only NaCl only   l-H2O2 only
>2x decreases 1050 1784 1845 835 845   329
  1. aNumbers of genes with at least two-fold increase or decrease in their transcriptions under the specified stress conditions are presented for both the control and the ΔatfA strains
  2. bStressor concentrations are presented in footnotes to Table 2
  3. cMSB, tBOOH, diamide, l-H2O2, h-H2O2 and NaCl stress treatments