Table 8 Gene list in each of the six clusters obtained from hierarchical clustering analysis of 249 genes upon stimulation by TNFα in epithelial and mesenchymal state. Each cluster corresponds to that in Fig. 6b
Cluster A | Cluster B | Cluster C | Cluster D | Cluster E | Cluster F | |
|---|---|---|---|---|---|---|
1 | RNF19B | DUSP6 | SNCAIP | PIM3 | PLAUR | SLC2A6 |
2 | IRF1 | EGR1 | TNFAIP2 | CLDN1 | MAFF | SYNPO |
3 | GBP1 | DUSP5 | CSF1 | SERPINB1 | NKX3-1 | TLR2 |
4 | TNFSF15 | SLITRK6 | DRAM1 | STARD5 | IL6 | COL12A1 |
5 | BTG2 | MAT2A | IKBKE | KRT6B | IL8 | FEZ1 |
6 | SPRR2D | NAB2 | SLC39A8 | GBP2 | PTX3 | PID1 |
7 | HCAR3 | CYP1A1 | DHRS3 | TNF | MGLL | |
8 | HCAR2 | FAM110C | SPRR1A | CXCL3 | SERPINE2 | |
9 | IL1RN | KIAA1551 | ITGB8 | CXCL2 | LBH | |
10 | TNFAIP8 | FBXW7 | ANKRD33B | NFKBIZ | TNC | |
11 | FOSB | SGK223 | PI3 | CSF2 | MMP9 | |
12 | NR4A1 | EMP1 | CDC42EP4 | IL1A | IL7R | |
13 | NCOA7 | SPRY2 | LYPD3 | IL1B | LAMB3 | |
14 | SERPINB2 | TIPARP | LPAR6 | NFKBIA | PIK3IP1 | |
15 | ARL5B | SRF | PRSS8 | NFKBIE | NAMPT | |
16 | ITPKC | TGIF1 | DDX58 | NUAK2 | ITGA5 | |
17 | GATA6 | FOSL1 | C1orf226 | LIF | DNER | |
18 | SDC4 | GADD45A | ISG15 | TNFAIP3 | GPR176 | |
19 | RAP2B | CXCL16 | TNFAIP6 | TGM2 | ||
20 | OVOL1 | SLPI | JPH2 | |||
21 | PIM1 | OAS1 | COL27A1 | |||
22 | HBEGF | TGM1 | STC2 | |||
23 | EREG | MUC1 | FSTL3 | |||
24 | TRIB1 | PSTPIP2 | SOX4 | |||
25 | EGR3 | SCNN1G | DUSP1 | |||
26 | PHLDA2 | SRD5A1 | ST3GAL1 | |||
27 | MAP3K14 | S100A8 | FADS3 | |||
28 | LRIG1 | MMP28 | BHLHE40 | |||
29 | KRT15 | PRODH | RHOB | |||
30 | HAS3 | IFIH1 | SPRY4 | |||
31 | IFFO2 | ASS1 | AKAP12 | |||
32 | AKR1B10 | GCLC | ANGPTL4 | |||
33 | CKB | LRRC8D | DLC1 | |||
34 | CALML3 | OAS3 | THBS1 | |||
35 | SLC2A1 | UBE2L6 | SEMA7A | |||
36 | AQP3 | IFI6 | NNMT | |||
37 | IL6R | TAP1 | ICAM1 | |||
38 | SESN3 | PSMB10 | XBP1 | |||
39 | ZNF462 | HLA-F | CXCR7 | |||
40 | DST | CDKN1C | MSC | |||
41 | HR | ALDH2 | CXCL1 | |||
42 | C1orf116 | SQRDL | CSF3 | |||
43 | WEE1 | STAP2 | ZC3H12A | |||
44 | GJB2 | PRKAG2 | INHBA | |||
45 | TSC22D1 | SGPP2 | SERPINA1 | |||
46 | CYP1B1 | C1R | EDN1 | |||
47 | BCL10 | TRANK1 | G0S2 | |||
48 | ALDH1A3 | APOL6 | LOC284454 | |||
49 | PHLDA1 | PARP14 | BMP2 | |||
50 | ERRFI1 | CXCL10 | DKK3 | |||
51 | TCF4 | BIRC3 | DKK1 | |||
52 | STK40 | TYMP | SMAD7 | |||
53 | AP5B1 | CD74 | PTPRE | |||
54 | FAM214A | SERPINA3 | F2R | |||
55 | OAS2 | TNFRSF12A | ||||
56 | WFDC2 | TNFRSF10D | ||||
57 | SFTPD | ZBED2 | ||||
58 | RHCG | NEDD9 | ||||
59 | MX1 | EMP3 | ||||
60 | PSMB9 | GFPT2 | ||||
61 | BBOX1 | MRAS | ||||
62 | IFI27 | AFAP1L1 | ||||
63 | SLC6A9 | IL1R1 | ||||
64 | IFIT3 | TLR4 | ||||
65 | MLPH | |||||
66 | CCBE1 | |||||
67 | IGFL1 | |||||
68 | HRH1 | |||||
69 | AOX1 | |||||
70 | MARCKSL1 | |||||
71 | CHST2 | |||||
72 | SERPINE1 | |||||
73 | KCNJ12 | |||||
74 | MCAM | |||||
75 | PRSS23 |