Populational landscape of INDELs affecting transcription factor-binding sites in humans

BMC Genomics

Table 2 TFBS-ID within the 5 KB window upstream of TSS and with highest δ in AFR, ASN or EUR.

Population	dbSNP id	Gene	Type	Size	Population Frequency	δ
AFR	rs113103282	CMAHP	DEL	1	0.88	0.71
	rs111659599	TMEM14C	DEL	6	0.73	0.70
	rs201685762	ATP1A1OS	DEL	3	0.75	0.69
	rs200228600	ATP1A1OS	DEL	2	0.83	0.68
	rs60963584	SAMD4B	INS	1	0.79	0.68
	rs34107968	MASP2	DEL	3	0.08	-0.67
	rs3842412	MIR6805, RPL28, TMEM238	DEL	14	0.19	-0.66
	rs201075641	ATP1A1OS	DEL	4	0.71	0.65
	rs60602324	IQCG	INS	1	0.88	0.65
	rs59484263	RESP18	DEL	1	0.89	0.64
EUR	rs28366020	NCDN	DEL	3	0.06	-0.62
	rs5840961	RP5-1004I9.1	INS	1	0.08	-0.57
	-	RP5-1004I9.1	INS	1	0.08	-0.55
	rs34313783	CELA3B	DEL	1	0.62	0.53
	rs66822811	DUT	DEL	38	0.78	0.52
	rs5820777	FAM117A	DEL	1	0.66	0.50
	rs200692689	MRPL36	INS	2	0.88	0.49
	-	MRPL36	INS	1	0.88	0.49
	rs199953326	MRPL36	DEL	1	0.88	0.49
	rs75077631	F12	INS	1	0.77	0.49
ASN	rs201884277	CCNL2	DEL	2	0.87	0.75
	rs75244934	MIR6808	DEL	2	0.83	0.69
	rs139938620	TAS1R3	DEL	13	0.79	0.68
	rs34692283	ADAT1	DEL	2	0.74	0.67
	rs55726149	EZR-AS1	INS	3	0.20	-0.60
	rs77949675	PHLDA1	DEL	2	0.78	0.60
	rs35231579	BAHCC1	DEL	1	0.16	-0.58
	rs139775692	ACAP3, PUSL1	DEL	11	0.79	0.58
	rs61077744	PYY	DEL	1	0.70	0.57
	rs149347369	FLJ42351	INS	5	0.79	0.55

ISSN: 1471-2164