Table 6 InterProscan5 domain annotation comparison between RRes v4.0 versus MIPS v3.2. The number of proteins identified with protein domains associated with InterProscan ID’s that are linked to virulence genes. Those in bold are increased in the RRes v4.0 set
From: The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum
| Â | Â | Â | RRes | MIPS |
|---|---|---|---|---|
Parent Inter ID | Child Interpro ID | Â | no. protein | no. protein |
IPR017853 | Glycoside hydrolase superfamily | 122 | 122 | |
IPR029058 | Alpha/Beta hydrolase fold | 286 | N/A | |
| Â | IPR000675 | cutinase | 13 | 12 |
| Â | IPR001031 | thioesterase | 5 | 5 |
| Â | IPR000383 | Xaa-Pro dipeptidyl-peptidase-like domain | 4 | 4 |
| Â | IPR000073 | Alpha/beta hydrolase fold-1 | 81 | 21 |
| Â | IPR001375 | Peptidase S9, prolyl oligopeptidase, catalytic domain | 9 | 9 |
| Â | IPR002018 | Carboxylesterase, type B | 26 | 26 |
| Â | IPR002921 | Fungal lipase-like domain | 8 | 8 |
| Â | IPR002925 | Dienelactone hydrolase | 8 | 8 |
| Â | IPR003140 | Phospholipase/carboxylesterase/thioesterase | 5 | 5 |
| Â | IPR013094 | Alpha/beta hydrolase fold-3 | 30 | 31 |
| Â | IPR029059 | Alpha/beta hydrolase fold-5 | 12 | N/A |
IPR003439 | ABC transporter-like | 62 | 62 | |
IPR011050 | Pectin lyase fold/virulence factor | 33 | 33 | |
| Â | IPR000070 | Pectinesterase, catalytic | 3 | 3 |
IPR004835 | Chitin synthase | 12 | 9 | |
IPR001138 | Zn(2)-C6 fungal-type DNA-binding domain | 358 | 316 | |
IPR001128 | Cytochrome P450 | 114 | 114 | |
IPR011701 | Major facilitator superfamily | 250 | 248 | |
IPR015433 | Phosphatidylinositol kinase | 3 | 2 | |
IPR015500 | Peptidase S8, subtilisin-related | 28 | 29 | |
IPR001283/IPR014044 | Cysteine-rich secretory protein, allergen V5/Tpx-1-related/CAP domain | 5 | 5a | |
IPR011329 | Killer toxin | 4 | 4 | |