Table 2 Abiotic or biotic stress response and flowering/seed development genes with d _N/d _S > 1

 m01oak04128cC-t01.1

Homeodomain-like superfamily protein

MEE3

AT2G21650

[10]

—

  m01oak00269cC-t01.1

light-harvesting complex of photosystem II 5

LHCB5

AT4G10340

6.66

4.60

 m01oak09138CC-t01.1

co-factor for nitrate, reductase and xanthine dehydrogenase 7

CNX7

AT4G10100

6.49

[10]

 m01oak41018Ci-t01.1

TIR domain

PF13676; PF01582

4.42

—

 m01oak10842cC-t01.1

growth-regulating factor 5

GRF5

AT3G13960

3.36

—

 m01oak08493CC-t01.1

Drought-responsive family protein

AT4G02200

2.94

2.64

 m01oak27235Ct-t01.1

MatE

PF01554

2.72

—

 m01oak08705CC-t01.1

DNAJ heat shock N-terminal domain-containing protein

AT5G18750

2.36

0.32

 m01oak14478Cc-t01.1

cell wall / vacuolar inhibitor of fructosidase 2

C/VIF2

AT5G64620

2.34

—

 m01oak12092Cf-t01.1

Mlo family

PF03094

2.02

—

 m01oak06031CC-t01.1

Mlo family

PF03094

1.83

—

 m01oak08883CC-t01.1

hydroxyproline-rich glycoprotein family protein

ELF3

AT2G25930

1.78

1.38

 m01oak35884CF-t01.1

TIR domain

PF13676; PF01582

1.76

—

 m01oak20809ct-t01.1

DNA mismatch repair protein MutS, type 2

AT1G65070

1.76

—

 m01oak11848cC-t01.1

Leucine-rich repeat (LRR) family protein

AT5G66330

1.62

—

 m01oak08297cC-t01.1

ATP binding microtubule motor family protein

AT5G02370

1.61

1.52

 m01oak01508Ct-t01.1

hydroxymethylbilane synthase

HEMC

AT5G08280

1.57

—

 m01oak34476cC-t01.1

endonuclease V family protein

AT4G31150

1.56

—

 m01oak17475CC-t01.1

5ʹ-3ʹ exonuclease family protein

AT1G01880

1.55

1.01

 m01oak50068jm-t01.1

Arabidopsis broad-spectrum mildew resistance protein

RPW8

PF05659

1.43

—

 m01oak16289cT-t01.1

chitin elicitor receptor kinase 1

CERK1

AT3G21630

1.38

—

 m01oak01759cF-t01.1

TIR domain

PF01582

1.34

1.73

 m01oak44069Cf-t01.1

TIR and NB-ARC domains

PF13676; PF01582; PF00931

1.28

0.30

 m01oak10547CC-t01.1

abscisic acid responsive elements-binding factor 2

ABF2

AT1G45249

1.27

1.19

 m01oak02511cC-t01.1

Auxin-responsive family protein

AT3G25290

1.23

[10]

 m01oak14169cC-t01.1

Zinc finger C-x8-C-x5-C-x3-H type family protein

FES1

AT2G33835

1.20

0.60

  m01oak16383cC-t01.1

K ⁺ transporter 1

KT1

AT2G26650

1.15

0.68

 m01oak06110CC-t01.1

SUPPRESSOR OF AUXIN RESISTANCE 3

SAR3

AT1G80680

1.10

0.88

 m01oak00652cC-t01.1

DUTP-PYROPHOSPHATASE-LIKE 1

DUT1

AT3G46940

1.10

1.02

 m01oak00240cC-t01.1

germin 3

GER3

AT5G20630

1.10

—

  m01oak02432Ct-t01.1

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

NDR1

AT3G20600

1.02

1.09

 m01oak06210CF-t01.1

photolyase 1

PHR1

AT1G12370

1.02

1.60

 m01oak06777CC-t01.1

F-box family protein

AT2G16365

0.75

1.08

 m01oak09461cT-t01.1

cyclic nucleotide-binding transporter 1

CNBT1

AT3G17700

0.53

1.04

 m01oak10758Ct-t01.1

ARP protein (REF)

NQR

AT1G49670

0.52

1.09

 m01oak09684cC-t01.1

SBP domain

PF03110

0.51

2.46

 m01oak11993SC-t01.1

purine permease 10

PUP10

AT4G18210

0.46

1.70

 m01oak08222Cf-t01.1

COP1-interacting protein 7

CIP7

AT4G27430

0.45

1.37

 m01oak14212jC-t01.1

HhH-GPD base excision DNA repair family protein

AT4G12740

0.41

1.21

 m01oak18107cC-t01.1

5ʹ-3ʹ exonuclease family protein

AT1G18090

0.23

1.15

 m01oak25703cC-t01.1

UDP-glycosyltransferase 73B4

UGT73B4

AT2G15490

0.01

1.39

 m01oak10875CT-t01.1

Male sterility protein; 3-β hydroxysteroid dehydrogenase/isomerase, NAD dependent epimerase/dehydratase families

PF07993; PF01073; PF01370

6.26

—

 m01oak08883CC-t01.1

hydroxyproline-rich glycoprotein family protein

ELF3

AT2G25930

1.78

1.38

 m01oak26837JF-t01.1

S-locus glycoprotein family; D-mannose binding lectin; PAN-like, protein kinase, protein tyrosine kinase domains

PF08276; PF00954; PF01453; PF00069; PF07714

1.69

0.85

 m01oak01757cC-t01.1

Glucose-methanol-choline (GMC) oxidoreductase family protein

HTH

AT1G72970

1.53

1.26

 m01oak12787cC-t01.1

myosin heavy chain-related; maternal effect embryo arrest 13

MEE13

AT2G14680

1.30

0.47

 m01oak04795cc-t01.1

Enoyl-CoA hydratase/isomerase family

AIM1

AT4G29010

1.25

0.80

 m01oak28949ci-t01.1

S-locus glycoprotein family; D-mannose binding lectin

PF00954; PF01453

1.16

—

 m01oak19887cC-t01.1

S-locus glycoprotein family; D-mannose binding lectin; Protein kinase, protein tyrosine kinase domains

PF00954; PF01453; PF00069; PF07714

1.02

—

 m01oak09684cC-t01.1

SBP domain

PF03110

0.51

2.46

 m01oak11825cC-t01.1

TCP-1/cpn60 chaperonin family protein; embryo defective 3007

EMB3007

AT5G18820

0.33

1.66