Table 2 Overview of all next generation sequencing data sets used in this study. SRA studies SRX736627, SRX738984 and SRX738987 were carried out at the IMSB Mainz. All other sequencing data was downloaded from the NCBI Sequence Read Archive
Organism | Source | Tissue | SRA study | Platform | Read count | Read layout |
|---|---|---|---|---|---|---|
African ostrich (Struthio camelus) | transcriptomic | cerebellum | SRX736627 | Illumina HiSeq 2000 | 70,355,488 | 100Â bp paired |
African ostrich (Struthio camelus) | transcriptomic | testis | SRX738984 | Illumina HiSeq 2000 | 32,268,702 | 100Â bp paired |
African ostrich (Struthio camelus) | genomic | - | SRX334065 | Illumina HiSeq 2000 | 210,096,016 | 100Â bp paired |
SRX334066 | 237,908,622 | |||||
SRX334067 | 183,703,328 | |||||
SRX334068 | 170,644,024 | |||||
SRX334072 | 160,894,606 | |||||
Emu (Dromaius novaehollandiae) | genomic | brain | SRP019803 | Illumina HiSeq 2000 | 68,379,320 | 80Â bp paired |
Emu (Dromaius novaehollandiae) | transcriptomic | embryo | SRP019802 | Illumina HiSeq 2000 | 51,118,472 | 80Â bp paired |
Emu (Dromaius novaehollandiae) | transcriptomic | generic sample | SRP001362 | LS454 | 182,922 | 274Â bp single |
White-throated sparrow (Zonotrichia albicollis) | transcriptomic | brain | SRP029385 | Illumina HiSeq 2000 | 196,980,056 | 100Â bp single |
Chicken (Gallus gallus) | transcriptomic | embryo | DRP000595 | Illumina HiSeq 2000 | 461,468,546 | 100Â bp single |
Chicken (Gallus gallus) | transcriptomic | brain | SRX196389 | Illumina HiSeq 2000 | 54,177,792 | 35Â bp paired |
SRX196371 | 235,457,560 | 80Â bp paired | ||||
SRX196380 | 64,532,328 | 40Â bp paired | ||||
Chicken (Gallus gallus) | transcriptomic | testis | SRX196397 | Illumina HiSeq 2000 | 74,846,788 | 40Â bp paired |
SRX196388 | 22,373296 | 36Â bp paired | ||||
SRX196379 | 231,583,782 | 80Â bp paired | ||||
Chicken (Gallus gallus) | transcriptomic | hypo-thalamus | SRX316899 | Illumina HiSeq 2000 | 191,561,330 | 100Â bp paired |
SRX316900 | 188,549,958 | |||||
Collared flycatcher (Ficedula albicollis) | transcriptomic | embryo | ERX144565 | Illumina Genome Analyzer IIx | 49,600,302 | 100Â bp paired |
- | ||||||
ERX144572 | ||||||
Japanese quail (Coturnix japonica) | genomic | - | DRX001717 | Illumina HiSeq 2000 | 865,334,134 | 100Â bp paired |
Zebra finch (Taeniopygia guttata) | transcriptomic | brain | SRX738987 | Illumina HiSeq 2500 | 9,535,066 | 150Â bp paired |