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Table 1 Sequencing and de novo Trinity assembly metrics

From: RNAseq analysis of fast skeletal muscle in restriction-fed transgenic coho salmon (Oncorhynchus kisutch): an experimental model uncoupling the growth hormone and nutritional signals regulating growth

 

WT

TR

Paired-end reads

351,369,759

353,181,226

Reads assembly

267,224,210

254,344,286

Percentage assembly

71.53

72.04

Contigs

323,115

Average length (bp)

1,103

N50 (bp)

2,142

Components annotated

149,738

Unigenes

19,093

Complete CDS

10,030

KAAS annotated maps

309

  1. TR: restriction-fed growth hormone-transgenic coho salmon; WT: wild-type coho salmon; N50: average length that contains at least half of the sum of the lengths for all contigs; bp: base pair; CDS: coding sequence; KAAS: KEEG automatic annotation service