Table 2 Summary of alignment length, number of SNPs, number of non-synonymous SNPs and the frequency of SNPs per 1,000Â bp of 12 genes of the phenylpropanoid-flavonoid pathways in each of three mango varieties
Gene | Length (bp) | KP | IW | NDM | SNPs per 1,000Â bp | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
No. of SNPs | No. of non-synonymous | SNPs per 1,000Â bp | No. of SNPs | No. of non-synonymous | SNPs per 1,000Â bp | No. of SNPs | No. of non-synonymous | SNPs per 1,000Â bp | |||
PAL | 2,123 | 2 | 1 | 0.9 | 5 | 3 | 2.4 | 4 | 1 | 1.9 | 1.9 |
C4H | 1,499 | 0 | 0 | - | 0 | 0 | - | 6 | 5 | 4 | 1.3 |
4CL | 1,637 | 1 | 1 | 0.6 | 19 | 9 | 11.6 | 0 | 0 | - | 4.1 |
C3’H | 1,524 | 8 | 1 | 5.2 | 6 | 0 | 3.9 | 5 | 1 | 3.3 | 4.2 |
CHS1 | 1,171 | 3 | 2 | 2.5 | 6 | 0 | 5.1 | 1 | 0 | 0.9 | 2.8 |
CHS2 | 1,179 | 0 | 0 | - | 1 | 0 | 0.8 | 2 | 0 | 1.7 | 0.8 |
F3H1 | 1,082 | 0 | 0 | - | 1 | 1 | 0.9 | 0 | 0 | - | 0.3 |
F3H2 | 1,075 | 10 | 6 | 9.3 | 6 | 4 | 5.6 | 2 | 0 | 1.9 | 5.6 |
F3’H | 1,548 | 9 | 5 | 5.8 | 7 | 2 | 4.5 | 12 | 6 | 7.7 | 6.0 |
DFR | 1,002 | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0.7 |
ANS | 919 | 1 | 0 | 1.1 | 4 | 2 | 4.4 | 1 | 0 | 1.1 | 2.2 |
ANR | 761 | 6 | 5 | 7.9 | 5 | 1 | 6.5 | 9 | 4 | 11.8 | 8.8 |