Table 3 Characteristics of non-synonymous SNPs of 12 genes of the phenylpropanoid-flavonoid pathways in three mango varieties

PAL

399

(A/G)TG

Ser – Gly

A

G

A

702

(A/G)GT

Ser – Gly

A

A

G

718

G(A/T)G

Glu - Val

A/T

A

A

1,387

C(T/C)T

Leu – Pro

T

T/C

T

1,980

(G/A)CA

Ala – Thr

G

A

G

C4H

52

(G/A)TT

Val – Ile

G

G

G/A

124

(C/G)TT

Leu – Val

C

C

C/G

183

TT(A/C)

Leu – Phe

A

A

A/C

205

(C/T)TT

Leu - Phe

C

C

C/T

751

(C/A)AA

Gln – Lys

C

C

C/A

4CL

56

C(C/T)T

Pro – Leu

C/T

C

C

206

G(T/C)C

Val – Ala

T

C

T

247

(C/A)TG

Leu – Met

C

A

C

304, 306

(C/G)G(C/T)

Arg - Gly

CGC

GTG

CGC

433

(A/G)AA

Lys – Glu

A

G

A

1,159

(C/G)CA

Pro – Ala

C

G

C

1,290

GA(A/T)

Glu – Asp

A

T

A

1,557

GA(T/A)

Asp – Glu

T

A

T

C3’H

797

G(T/C)C

Val – Ala

T

T

C

803

CA(A/T)

Gln – His

T

A

A

CHS1

247

(G/A)TT

Val – Ile

A

G

G

253

(G/C)AA

Glu – Gln

C

G

G

F3H1

902

T(A/G)C

Tyr – Cys

A

G

A

F3H2

14

A(C/G)T

Thr – Ser

C

G

C

161

G(G/A)T

Gly – Asp

G

A

G

271

(A/G)AA

Lys – Glu

G

A

A

284

T(T/C)G

Leu – Ser

C

T

T

509

A(A/T)G

Lys – Met

A

T

A

626

GA(A/C)

Glu – Asp

C

A

A

690

CA(G/C)

Gln – His

C

G

G

796

(A/T)GC

Ser – Cys

T

A

A

1,018

(G/T)CC

Ala – Ser

T

G

G

1,067

C(A/G)G

Gln – Arg

A

G

A

F3’H

35

G(C/G)C

Ala – Gly

G

C

C/G

61

(T/A)TA

Leu – Ile

A

T

A/T

92

C(C/G)(T/C)

Pro – Arg

CGT

CCT

C(G/C)(C/T)

115

(T/C)GG

Trp – Arg

C

T

C/T

790

(C/A)(G/T)T

Agr – Ile - Ser

ATT

CGT

A(G/T)T

863

G(G/A)A

Agr – Glu

G

G

A/G

1,243

(C/A)TA

Leu - Ile

A

C

C

DFR

901

(A/G)AG

Lys – Glu

G

A

A

ANS

169

GA(G/C)

Glu – Asp

G

C

G

633

G(G/A)G

Arg – Glu

G

A

G

ANR

49

(A/G)CC

Ala – Thr

A/G

A

A

68

T(T/G)G

Leu – Trp

G/T

T

T

128

G(A/G)T

Asp – Arg

A

A

G

136

(C/A)AA

Gln – Lys

C

C

A

172

(G/T)GT

Cys – Arg

T/G

G

G

226

(C/T)CT

Cys – Pro

T/C

C

C

329

G(A/G)G

Glu – Agr

A

A

G

506

G(T/C)C

Val – Ala

T

T

C

552

GA(G/T)

Glu - Asp

G

G

T

653

T(T/A)A

Leu – Ser

T

T/C

C