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Table 5 Putative genes associated with eggshell quality

From: Genome-wide association study revealed a promising region and candidate genes for eggshell quality in an F2 resource population

Gene symbola

Chr

Tag SNP

Position

Location

AA subtitution

SIFTb

PIK3C2G

GGA1

rs312347405

64,287,542

Exon 27 of 32

Leu1253Val

0.14

ITPR2

GGA1

rs316607577

67,961,420

Exon 25 of 56

Ser1072Gly

0.40

rs316447591

67,808,349

3′UTR region

-

-

NCAPG

GGA4

rs14491030

75,486,534

Exon 14 of 21

Val674Ala

0.74

  1. Chr chromosome, AA amino acid, SIFT Sorting intolerant from tolerant
  2. aIdentification of the gene according to Ensembl genes database 76
  3. bSIFT is a program that predicts whether an amino acid substitution affects protein function. Small values means deleterious amino acid change