From: Comparison and evaluation of two exome capture kits and sequencing platforms for variant calling
 | TargetSeq-Proton-specific(dbSNP|novel)a | Concordant(dbSNP|novel) | SureSelect-HiSeq-specific(dbSNP|novel) | ||||||
---|---|---|---|---|---|---|---|---|---|
 | Total | SNPs | InDels | Total | SNPs | InDels | Total | SNPs | InDels |
S1 | 1470 (1021|449) | 1274 (998|276) | 196 (23|173) | 17202 (16288|914) | 16833 (15943|890) | 369 (345|24) | 6682 (6348|334) | 5851 (5606|245) | 831 (742|89) |
S2 | 1432 (1018|414) | 1229 (996|233) | 203 (22|181) | 19039 (18038|1001) | 18655 (17683|972) | 384 (355|29) | 4833 (4533|300) | 4044 (3839|205) | 789 (694|95) |
S3 | 1518 (1073|445) | 1305 (1046|259) | 213 (27|186) | 18087 (17149|938) | 17720 (16810|910) | 367 (339|28) | 5689 (5390|299) | 4897 (4671|226) | 792 (719|73) |
S4 | 1462 (1069|393) | 1326 (1051|275) | 136 (18|118) | 17808 (16891|917) | 17409 (16521|888) | 399 (370|29) | 5681 (5353|328) | 4922 (4674|248) | 759 (679|80) |