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Table 1 Summary of the sequencing results

From: RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

Sample name

Raw reads

Clean reads

Total mapped

C43_control

57,677,570

54,390,598

42,095,182 (77.39 %)

C43_salt

65,810,400

62,197,682

48,876,470 (78.58 %)

subtotal

123,487,970

116,588,280

90,971,652 (78.0 %)

C198_control

60,527,682

57,239,830

44,344,526 (77.47 %)

C198_salt

67,794,164

64,022,020

49,449,614 (77.24 %)

Subtotal

128,321,846

121,261,850

93,794,140 (77.3 %)

total

251,809,816

237,850,130

 
  1. Root tips of two bermudagrass genotypes with differential salt tolerance, C43 (tolerant) and C198 (sensitive) were sampled for RNA sequencing after exposed to 0 (control) and 200 mM NaCl (salt) for 7 days
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BMC Genomics

ISSN: 1471-2164

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