RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

Table 3 Summary of the annotation results.

Data base	Number of Unigenes	Percentage (%)
Annotated in NR	45957	44.5
Annotated in NT	26243	25.4
Annotated in KO	7336	7.1
Annotated in SwissProt	30741	29.8
Annotated in PFAM	35960	34.8
Annotated in GO	40483	39.2
Annotated in KOG	18003	17.4
Annotated in all Databases	2936	2.8
Annotated in at least one Database	53765	52.0
Total Unigenes	103324	100

All the assembled high-quality unigenes were annotated by aligning with the public databases, including NCBI non-redundant protein database (NR), NCBI-nucleotide sequences (Nt), Protein family (Pfam), euKaryotic Ortholog Groups (KOG), a manually annotated and reviewed protein sequence database (Swiss-Prot) and Gene Ontology (GO) database

ISSN: 1471-2164