Table 3 Variants relative to the M129 reference strain
Strain | Total variants | Non-synonymous genic SNPs | Synonymous genic SNPs | Genic indels | IntragenicSNPs and indels | |||||
|---|---|---|---|---|---|---|---|---|---|---|
Coding | Start lost | Stop gain | Stop lost | In frame | Frameshift | |||||
Type 1 | M129 | 235 | 113 | 0 | 3 | 0 | 41 | 10 | 36 | 32 |
| Â | 142.8 | 334 | 174 | 1 | 2 | 1 | 67 | 4 | 22 | 63 |
| Â | 51494 | 382 | 202 | 1 | 3 | 1 | 77 | 7 | 24 | 67 |
| Â | 54089 | 431 | 223 | 1 | 3 | 1 | 90 | 8 | 36 | 69 |
| Â | 54524 | 385 | 208 | 1 | 2 | 1 | 76 | 5 | 22 | 70 |
| Â | 85084 | 404 | 199 | 1 | 2 | 1 | 88 | 8 | 38 | 67 |
| Â | 85138 | 365 | 183 | 1 | 1 | 1 | 72 | 2 | 25 | 80 |
Type 2 | FH | 1581 | 705 | 0 | 8 | 6 | 474 | 35 | 109 | 244 |
| Â | 19294 | 1606 | 705 | 0 | 11 | 6 | 490 | 33 | 110 | 251 |
| Â | 39443 | 1615 | 713 | 0 | 10 | 6 | 489 | 36 | 110 | 251 |
| Â | M1139 | 1581 | 687 | 0 | 8 | 6 | 485 | 33 | 114 | 248 |
| Â | M2192 | 1604 | 705 | 0 | 11 | 6 | 490 | 35 | 109 | 248 |
| Â | M2592 | 1588 | 697 | 0 | 8 | 6 | 484 | 33 | 111 | 249 |
| Â | MAC | 1569 | 677 | 0 | 8 | 7 | 477 | 34 | 114 | 252 |
| Â | PO1 | 1588 | 700 | 0 | 8 | 6 | 482 | 34 | 116 | 242 |