Property | Value |
---|---|
Scaffolds in assembly | 7875 |
Total assembly length (Mbp) | 26.05 |
N50 (kb) | 22 |
Largest scaffold (kb) | 145 |
Assembly GC content (%) | 54.76 |
Assembly gaps (%) | 0.73 |
Repetitive content (%) | 7.81 |
Genes | 7831 |
Gene length (median) | 1420 |
Transcript length (median) | 1275 |
Exon length (median) | 261 |
CDS length (median) | 1272 |
Protein length (median) | 424 |
Spliced genes (total, %) | 6038 (77.1Â %) |
Exons per gene (median) | 3 |
Intron length (median) | 62 |
Introns per spliced gene (median) | 3 |
Gene density (genes/Mbp) | 300.57 |
Proteins with internal stops (total, %) | 0 |
Unique PFAM domains | 3498 |
Genes with PFAM (total, %) | 5556 (70.95Â %) |
Genes with GO (total, %) | 3904 (49.85Â %) |
Genes with signalP (total, %) | 891 (11.38Â %) |
Genes with TMHMM (total, %) | 1493 (19.07Â %) |
CEGMA completeness (%) | 98.69 |