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Table 5 Descriptive statistics for SNP containing haploid sequences constructed by SIH averaged over all autosomes

From: A simple procedure for directly obtaining haplotype sequences of diploid genomes

Sample Set1 Mean haplotype length (kbp) N50 haplotype length (kbp) Max haplotype length (kbp) % SNP phased % Genes Within haplotypes % Genome in haplotype blocks
Angus Steer CM 43 97 738 88 38 64
Angus Steer TC 82 190 946 87 46 68
EAZ Cells CM 39 105 921 34 19 27
EAZ Cells TC 84 201 1653 30 42 32
EAZ Fosmids CM 65 134 1194 82 23 57
EAZ Fosmids TC 127 257 2457 80 48 66
Angus Bull CM 72 155 1243 31 12 22
Angus Bull TC 229 1142 7.878 53 14 38
  1. 1The low proportion of genome covered by the Angus Bull SNP haplotypes compared to the high genome coverage of scaffolds was partly due to a large proportion of scaffolds containing heterozygotes that were filtered prior to haplotype construction. For the Angus bull no scaffolds were used that contained heterozygotes, for the other sample sets scaffolds with a maximum of 3 heterozygotes or a maximum of 20 % heterozygotes were accepted and the heterozygous positions deleted