Fig. 10
From: A clone-free, single molecule map of the domestic cow (Bos taurus) genome
Comparisons of optical maps assemblies seeded by UMD3.1, or Btau4.6. (Cyan tracks show in silico restriction maps generated from sequence; Orange tracks show optical maps. Striated black, or white-filled boxes flag unaligned map fragment(s). Black vertical lines demarcate restriction fragments, or map alignments.) a: Alignments of BtOM1.0_chrs 27, 28, against the in silico maps of UMD3.1--chrs 27 and 28 (also see Fig. 3). b: Iterative assembly results for chrs 27 and 28 using Btau4.6 as the reference sequence. Note large inversion (far right), not present in UMD3.1, or optical maps, revealed within the Btau4.6 chr27 sequence. c: Alignment of the optical maps shown in (a) and (b). Inset shows 3.5 Mb region; vertical lines locate BamHI restriction sites. Pink fragment (500.0 Kb) shows the gap between the two optical map contigs in BtOM1.0 chromosome 28