Fig. 4
From: A clone-free, single molecule map of the domestic cow (Bos taurus) genome
Genome-wide alignment of BtOM1.0 to UMD3.1 and Btau4.6 sequence assemblies. Tracks show BtOM1.0 (center) alignments to UMD3.1 (top) and Btau4.6 (bottom) for each chromosome. Red highlights (center track) restriction fragments aligned to both in silico maps of UMD3.1 and Btau4.6; cyan (center track) highlights alignment of BtOM1.0 to UMD3.1, or Btau4.6; and white or black highlights no alignments to either sequence build. Inset (green box) shows a zoomed view of chr27 detailing a large-scale discordance with the optical map: an inverted sequence assembly within Btau4.6. Also note transposed sequence assemblies, flagged by black lines running between separate chromosomes