A clone-free, single molecule map of the domestic cow (Bos taurus) genome

Zhou, Shiguo; Goldstein, Steve; Place, Michael; Bechner, Michael; Patino, Diego; Potamousis, Konstantinos; Ravindran, Prabu; Pape, Louise; Rincon, Gonzalo; Hernandez-Ortiz, Juan; Medrano, Juan F.; Schwartz, David C.

doi:10.1186/s12864-015-1823-7

BMC Genomics

Table 2 Alignment statistics for BtOM1.0 vs. UMD3.1 and Btau4.6

From: A clone-free, single molecule map of the domestic cow (Bos taurus) genome

Chr. No	Chr. size (Mb)		No. of aligned map segments		Ave. aligned map segment size (MB)		Total mass of aligned map segment (Mb)		% Coverage		Telomere extension by OM (kb)
	UMD3.1	Btau4.6	UMD3.1	Btau4.6	UMD3.1	Btau4.6	UMD3.1	Btau4.6	UMD3.1	Btau4.6	UMD3.1		Btau4.6
1	158.34	161.43	5	8	27.92	15.79	139.62	126.3	88.18	78.24	646	392	668	17
2	137.06	141.97	2	6	60.62	18.95	121.23	113.72	88.45	80.10	123	0	135	117
3	121.43	126.84	3	10	34.80	9.83	104.41	98.33	85.98	77.52	726	0	300	0
4	120.83	123.81	5	4	21.32	24.88	106.58	99.53	88.21	80.39	255	0	397	0
5	121.19	125.25	7	6	15.23	16.34	106.64	98.04	87.99	78.28	256	567	345	1024
6	119.46	122.52	3	5	34.84	18.58	104.52	92.88	87.49	75.81	535	396	632	2132
7	112.64	113.03	5	9	18.89	9.62	94.45	86.54	83.85	76.56	173	125	58	718
8	113.38	116.85	3	4	32.64	22.60	97.92	90.39	86.36	77.36	388	1682	514	1275
9	105.71	108.5	2	4	46.94	21.40	93.88	85.58	88.81	78.88	276	61	1002	152
10	104.31	105.98	7	8	14.22	10.58	99.52	84.66	95.41	79.88	0	391	402	298
11	107.31	109.99	2	11	47.66	8.10	95.31	89.15	88.82	81.05	436	631	402	1019
12	91.16	85.12	2	6	38.06	11.31	76.11	67.85	83.49	79.71	177	52	1938	46
13	84.24	84.21	2	4	37.09	17.34	74.17	69.34	88.05	82.34	316	58	290	72
14	84.65	81.22	3	5	24.44	13.31	73.32	66.53	86.62	81.91	0	72	844	89
15	85.3	84.47	5	8	14.49	7.90	72.45	63.17	84.94	74.78	302	42	1240	249
16	81.72	77.71	9	8	7.57	7.45	68.15	59.57	83.39	76.66	0	385	637	99
17	75.16	76.28	2	3	32.56	19.77	65.12	59.31	86.64	77.75	254	39	265	71
18	66	65.81	7	7	6.88	6.09	48.15	42.6	72.95	64.73	252	59	883	59
19	64.06	64.85	6	8	8.96	6.34	53.77	50.68	83.94	78.15	188	147	1140	101
20	72.04	75.69	1	2	63.53	29.96	63.53	59.92	88.19	79.17	694	27	529	173
21	71.6	69.08	4	5	15.54	10.86	62.17	54.29	86.83	78.59	407	0	2080	1248
22	61.44	61.6	3	4	17.80	12.20	53.4	48.78	86.91	79.19	625	155	931	1050
23	52.53	52.33	2	3	22.83	13.98	45.65	41.94	86.90	80.15	410	0	0	264
24	62.71	64.51	1	5	56.86	10.54	56.86	52.72	90.67	81.72	250	96	862	92
25	42.9	44.08	2	4	18.16	8.47	36.31	33.89	84.64	76.88	295	367	0	412
26	51.68	51.83	1	2	43.31	18.89	43.31	37.78	83.80	72.89	370	0	389	0
27	45.41	48.46	1	2	38.83	18.52	38.83	37.03	85.51	76.41	976	109	145	336
28	46.31	45.96	4	4	10.27	9.30	41.09	37.18	88.73	80.90	809	462	809	514
29	51.51	51.81	3	2	14.34	19.57	43.02	39.13	83.52	75.53	192	164	583	770
X	148.82	88.65	33	31	3.56	2.19	117.59	67.91	79.01	76.60	0	2327	4680	2845
Total/Ave.	2660.90	2629.84	135	188	17.02	10.93	2297.08	2054.74	86.33	78.13	19135		38346

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