Table 1 Input files for the RNA-seq analysis pipeline
From: T-REx: Transcriptome analysis webserver for RNA-seq Expression data
A) Factors | B) Contrasts | C) Classes | ||||
|---|---|---|---|---|---|---|
Experiment | Strain | Time | A_F71Y-WT | BSU00490 | green | CodY |
WT1 | WT | T1 | B_R61K-WT | BSU01650 | green | CodY |
WT2 | WT | T1 | C_R61H-WT | BSU01660 | green | CodY |
F71Y1 | A_F71Y | T1 | Null-WT | BSU01670 | green | CodY |
F71Y2 | A_F71Y | T1 | Â | BSU01680 | green | CodY |
R61K1 | B_R61K | T2 |  | etc… | … | … |
R61K2 | B_R61K | T2 | Â | BSU03981 | red | CcpA |
R61H1 | C_R61K | T2 | Â | BSU03982 | red | CcpA |
R61H2 | C_R61K | T2 | Â | BSU03990 | red | CcpA |
null1 | Null | T2 | Â | BSU04160 | red | CcpA |
null2 | Null | T2 | Â | BSU04470 | red | CcpA |
|  |  |  |  | etc… | … | … |