The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity

Peters, Danielle L.; Lynch, Karlene H.; Stothard, Paul; Dennis, Jonathan J.

doi:10.1186/s12864-015-1848-y

Table 3 Bacteriophage DLP1 genome annotation

From: The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity

Gene	Start	End	Putative function	Strand	Length (AA)	Closest relative	Percent identity	Source	GenBank accession number
1	1	255	Hypothetical protein	+	84	ORF001	100	PA73	YP_001293408.1
2	252	518	Holin	+	88	Holin	99	PA25	YP_006299866.1
3	511	1,056	Endolysin	+	181	Endolysin	98	PA25	YP_006299867.1
4	1068	1373	Rz	+	101	Rz	99	Ab26	YP_009044338.1
5	1288	1569	Rz1	+	93	Rz1	100	PA25	YP_006299869.1
6	1627	2115	Small terminase	+	162	Small terminase	99	PA25	YP_006299870.1
7	2096	3691	Large terminase	+	531	Large terminase	100	Ab26	YP_001293413.1
8	3705	5210	Portal protein	+	501	Portal protein	98	Ab26	YP_009044342.1
9	5222	6316	F-like head morphogenesis protein	+	364	ORF008	100	PA73	YP_001293415.1
10	6353	7072	Scaffold protein	+	239	Scaffold protein	100	PA25	YP_006299874.1
11	7075	8052	Major capsid protein	+	325	ORF010	99	PA73	YP_001293417.1
12	8122	8526	Hypothetical protein	+	134	ORF011	100	PA73	YP_001293418.1
13	8592	8993	Hypothetical protein	+	133	ORF12	71	Ab26	YP_009044347.1
14	9005	9523	Hypothetical protein	+	172	Hypothetical protein	92	Ab26	YP_009044348.1
15	9527	9907	Head-tail joining protein	+	126	Hypothetical protein	98	PA25	YP_006299879.1
16	9904	10,359	Minor tail protein	+	151	ORF015	97	PA73	YP_001293422.1
17	10,372	11,907	Major tail tube protein	+	511	Major tail tube protein	99	PA25	YP_006299881.1
18	11,971	12,399	Tail chaperonin	+	142	ORF017	100	PA73	YP_001293424.1
19	12,408	12,764	Tail chaperonin	+	118	Tail chaperonin	100	PA25	YP_006299882.1
20	12,733	13,167	Hypothetical protein	+	144	ORF019	100	PA73	YP_001293426.1
21	13,173	16,708	Tape measure protein	+	1175	Tape measure protein	96	PA25	YP_006299885.1
22	16,701	17,663	Hypothetical protein	+	320	Hypothetical protein	87	PA25	YP_006299886.1
23	17,663	18,628	Hypothetical protein	+	321	Hypothetical protein	64	PA25	YP_006299887.1
24	18,634	20,346	Hypothetical protein	+	570	Hypothetical protein	96	PA25	YP_006299888.1
25	20,346	21,170	Hypothetical protein	+	274	Hypothetical protein	99	PA25	YP_006299889.1
26	21,174	23,615	Central tail hub	+	813	Central Tail Hub	99	PA25	YP_006299890.1
27	23,616	25,667	DNA polymerase	-	683	DNA polymerase	99	PA25	YP_006299891.1
28	25,679	26,821	Replicative clamp	-	380	Replicative clamp	99	PA25	YP_006299892.1
29	26,805	27,161	Hypothetical protein	-	118	ORF028	97	PA73	YP_001293435.1
30	27,166	28,821	DEAD box helicase	-	551	ORF029	100	PA73	YP_001293436.1
31	28,814	29,911	RecB exonuclease	-	365	ORF030	100	PA73	YP_001293437.1
32	29,817	30,344	Hypothetical protein	-	175	gp055	41	EamP-S6^a	YP_007005791.1
33	30,423	31,169	Hypothetical protein	-	248	Member of the DUF669 phage protein family	99	PA25	YP_006299897.1
34	31,228	31,944	RecA	-	238	RecA	99	Ab26	YP_009044366.1
35	31,999	32,439	Hypothetical protein	-	146	ORF033	99	PA73	YP_001293440.1
36	32,516	33,073	MazG	-	185	MazG	89	PA25	YP_006299900.1
37	33,193	33,399	Transcriptional regulator	+	68	ORF035	100	PA73	YP_001293442.1
38	33,389	35,710	Replicative primase/helicase	+	773	Replicative primase/helicase	99	PA25	YP_006299902.1
39	35,862	36,062	Hypothetical protein	+	66	Hypothetical protein	99	Ab26	YP_009044372.1
40	36,107	36,256	Hypothetical protein	+	49	KAK25_00040	96	PA25	YP_006299904.1
41	37,055	37,234	Hypothetical protein	+	59	Hypothetical protein ORF0038	92	PA73	YP_001293445.1
42	37,231	37,527	Hypothetical protein	+	98	ORF0039	98	PA73	YP_001293446.1
43	37,524	37,703	Hypothetical protein	+	59	Hypothetical protein	90	Ab26	YP_009044375.1
44	37,678	37,920	Hypothetical protein	+	80	Hypothetical protein	96	Ab26	YP_009044376.1
45	38,003	38,224	Hypothetical protein	+	73	X805_23910	56	DSM 6575^b	KDB52021.1
46	38,271	38,645	Hypothetical protein	+	124	KAK25_00046	99	PA25	YP_006299910.1
47	38,706	38,927	Hypothetical protein	+	73	KAK25_00047	97	PA25	YP_006299911.1
48	38,924	39,415	Vsr endonuclease	+	163	Vsr endonuclease	78	KL1^c	YP_006560795.1
49	39,403	39,618	Hypothetical protein	+	71	Hypothetical protein	99	Ab26	YP_009044380.1
50	39,615	39,794	Hypothetical protein	+	59	KAK25_00050	95	PA25	YP_006299914.1
51	39,855	40,154	Hypothetical protein	+	99	ORF0045	81	PA73	YP_001293452.1
52	40,171	40,461	Hypothetical protein	+	96	ORF0046	99	PA73	YP_001293453.1
53	40,454	40,687	Hypothetical protein	+	77	KAK25_00053	100	PA25	YP_006299917.1
54	40,983	41,450	dCMP deaminase	+	155	dCMP deaminase	98	PA25	YP_006299919.1
55	41,456	41,839	Hypothetical protein	+	127	ORF0050	100	PA73	YP_001293457.1
56	41,874	42,083	Hypothetical protein	+	69	ORF0051	96	PA73	YP_001293458.1
57	42,167	42,739	Hypothetical protein	+	190	ORF0052	99	PA73	YP_001293459.1

^a Erwinia phage vB_EamP-S6
^b Sphaerotilus natans subsp. natans DSM 6575
^cKL1 is Burkholderia phage KL1

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ISSN: 1471-2164

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