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Table 1 DEG genes

From: RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

Comparison

DEG-up

DEG-down

DEG-total

 B6d1_B6md1

0

0

0

 B6d3_B6md3

1012

325

1337

 B6d5_B6md3

935

89

1024

 B6d8_B6md3

1444

606

2050

 B6d14_B6md3

675

362

1037

 D2d1_D2md1

0

0

0

 D2d3_D2md3

1383

1042

2425

 D2d3_D2md5

2246

2289

4535

Comparison

B6-up

D2-up

DEG-total

 B6md1_D2md1

32

50

82

 B6md3_D2md3

253

225

478

 B6d1_D2d1

49

56

105

 B6d3_D2d3

84

114

198

 B6d5_D2d5

393

119

512

  1. Number of regulated genes from pairwise comparisons. Analysis was performed using LIMMA, setting a threshold of more than 1.4-fold (log2 = 0.5) change in expression levels and FDR < 5 %
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BMC Genomics

ISSN: 1471-2164

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