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Table 1 DEG genes

From: RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

Comparison DEG-up DEG-down DEG-total
 B6d1_B6md1 0 0 0
 B6d3_B6md3 1012 325 1337
 B6d5_B6md3 935 89 1024
 B6d8_B6md3 1444 606 2050
 B6d14_B6md3 675 362 1037
 D2d1_D2md1 0 0 0
 D2d3_D2md3 1383 1042 2425
 D2d3_D2md5 2246 2289 4535
Comparison B6-up D2-up DEG-total
 B6md1_D2md1 32 50 82
 B6md3_D2md3 253 225 478
 B6d1_D2d1 49 56 105
 B6d3_D2d3 84 114 198
 B6d5_D2d5 393 119 512
  1. Number of regulated genes from pairwise comparisons. Analysis was performed using LIMMA, setting a threshold of more than 1.4-fold (log2 = 0.5) change in expression levels and FDR < 5 %
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BMC Genomics

ISSN: 1471-2164

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