From: Transcriptomic changes of Legionella pneumophila in water
 |  |  | Log2 ratioa | ||
---|---|---|---|---|---|
Functional class and protein | Locus tag | Gene | 2Â hr/C | 6Â hr/C | 24Â hr/C |
Chemotaxis/motility | Â | Â | Â | Â | Â |
 Flagellar assembly protein | lpg1790 | fliO |  | 5.35 |  |
 Flagellar basal body rod protein | lpg1221 | flgG | 2.38 | 3.01 |  |
 Flagellar biosynthesis sigma factor | lpg1782 | fliA |  | 3.34 | 1.53 |
 Flagellar biosynthetic protein | lpg1788 | fliQ |  | 2.75 |  |
 Flagellar biosynthetic regulator | lpg1784 | flhF |  | 3.46 |  |
 Flagellar hook protein | lpg1219 | flgE |  | 4.17 | 3.79 |
 Flagellar L-ring protein | lpg1222 | flgH |  | 2.13 |  |
 Flagellar motor protein | lpg2318 | motA |  | 1.63 |  |
 Flagellar motor protein | lpg1780 | motB |  | 2.72 |  |
 Flagellar motor protein | lpg1781 | motC |  | 4.02 |  |
 Flagellar motor switch protein | lpg1792 | fliM |  | 3.48 | 1.44 |
 Flagellar P-ring protein | lpg1223 | flgI |  | 2.99 |  |
 Flagellin | lpg1340 | fliC | 1.22 | 1.71 |  |
Detoxification/adaptation | Â | Â | Â | Â | Â |
 Alkylhydroperoxidase | Lpg2349 | ahpD | 2.63 | 2.25 |  |
 Alkylhydroperoxide reductase | lpg2350 | ahpC | 1.74 | 1.64 |  |
 Alkylhydrogen peroxide reductase | lpg2965 | ahpC | 1.62 | 1.85 |  |
 Heat shock protein | lpg2024 | dnaJ | 1.56 | 1.96 |  |
 Heat shock protein | lpg2817 | yrfI | 1.62 | 2.77 |  |
 Aminoglycoside 6-adenylyltransferase | lpg2151 |  | 1.80 | 3.01 | 2.11 |
 Spectinomycin phosphotransferase | lpg1492 |  | 1.74 | 1.73 |  |
 Stress-induced protein | lpg2011 |  | 3.81 | 5.97 |  |
 Superoxide dismutase | lpg2348 | sodC | 2.45 | 2.88 |  |
 Universal stress protein A | lpg0935 |  |  | 1.59 |  |
Icm/dot effector | Â | Â | Â | Â | Â |
 Coiled-coil-containing protein | lpg1488 | legC5 | 1.75 | 1.05 |  |
 F-box protein | lpg2144 | legAU13 | 1.07 | 1.74 | 2.11 |
 Hypothetical | lpg0096 | ceg4 | 2.69 | 2.16 |  |
 Hypothetical | lpg2591 | ceg33 | 3.35 | 4.83 |  |
 Hypothetical | lpg1290 | lem8 | 1.59 | 2.48 | 2.20 |
 Hypothetical | lpg1496 | lem10 | 1.51 | 2.79 | 3.28 |
 Protein SdhA | lpg0376 | sdhA | 1.31 | 1.60 |  |
 Protein SidA | lpg0621 | sidA |  | 2.47 |  |
 Sid related protein-like | lpg2157 | sdeA |  | 2.33 | 1.60 |
 UBOX-containing protein | lpg2830 | legU2 | 1.35 | 2.34 |  |
 UVB-resistance protein | lpg1976 | legG1 | 1.66 | 1.65 |  |
Lipid metabolism | Â | Â | Â | Â | Â |
 3-hydroxybutyrate dehydrogenase | lpg2316 | bdhA |  | 2.40 | 1.31 |
Other functions | Â | Â | Â | Â | Â |
 6S RNA | ssrS |  | 3.65 | 3.55 | |
 RsmY | rsmY |  |  | 2.57 | |
 RsmZ | rsmZ |  | 1.58 | 1.80 | |
Signal transduction/other regulatory functions | Â | Â | Â | Â | |
 Response regulator TutC | lpg2146 |  |  | 2.39 | 1.10 |
 Sensor histidine kinase | lpg0230 | pleD |  | 2.95 | 2.27 |
 Sensor protein LuxN | lpg2734 |  | 1.23 | 1.89 |  |
 Sensory box protein, GGDEF/EAL domain | lpg0029 | rre41 | 1.33 | 1.07 |  |
 Sensory box protein, GGDEF/EAL domain | lpg1025 | yegE | 1.37 | 4.85 | 2.16 |
 Serine/threonine-protein kinase | lpg0208 | pkn5 |  | 1.25 |  |
 Sigma 54 modulation protein YhbH | lpg1206 |  |  | 3.95 | 4.04 |
 Signal transduction protein | lpg0156 |  | 3.11 | 5.19 |  |
Toxin production / other pathogen functions | Â | Â | Â | Â | |
 Enhanced entry protein EnhA | lpg1336 | enhA | 1.10 | 2.06 |  |
 Enhanced entry protein EnhA | lpg1386 |  |  | 1.28 | 1.31 |
 Enhanced entry protein EnhA | lpg2641 | enhA | 2.57 | 3.75 |  |
 Enhanced entry protein EnhA | lpg0910 | enhA |  | 1.72 | 3.18 |
 Enhanced entry protein EnhB | lpg2640 | enhB |  | 2.40 |  |
 Enhanced entry protein EnhC | lpg1172 |  |  | 2.58 | 5.87 |
 Enhanced entry protein EnhC | lpg1356 |  |  | 2.70 | 2.88 |
 RtxA | lpg0645 |  | 1.57 | 3.04 |  |
Transcription | Â | Â | Â | Â | Â |
 DNA binding protein | lpg2441 |  | 1.79 |  |  |
 RNA polymerase sigma-54 factor | lpg0477 |  |  | 1.44 |  |
 Transcription repair coupling factor | lpg0954 | mfd | 2.04 | 2.14 |  |
 Transcriptional regulator | lpg0586 |  | 1.24 | 3.75 | 4.48 |
 Transcriptional regulator, ArsR family | lpg2723 |  | 3.63 | 1.18 |  |
 Transcriptional regulator, AsnC family | lpg1486 |  |  | 2.33 |  |
 Transcriptional regulator, DeoR family | lpg2167 |  |  | 1.76 |  |
 Transcriptional regulator, LuxR family | lpg2524 |  |  | 1.52 | 1.73 |
 Transcriptional regulator, LysR family | lpg2138 |  | 3.58 | 4.21 |  |
 Transcriptional regulator, MarR family | lpg2140 |  | 1.80 | 1.90 |  |
Transport and binding | Â | Â | Â | Â | Â |
 IcmC (DotE) | lpg0453 | icmC |  | 1.27 | −1.11 |
 IcmC homolog (DotV) | lpg0472 |  | 2.06 | 2.69 |  |
 IcmD (DotP) | lpg0454 | icmD | 1.25 | 1.77 |  |
 IcmO (DotL) | lpg0446 | icmO |  | 2.07 | −1.50 |
 IcmP (DotM) | lpg0445 | icmP | 2.15 | 3.54 |  |
 IcmT | lpg0441 | icmT | 1.39 | 1.79 | −1.09 |
 IcmV | lpg2687 | icmV | 1.00 |  | −1.89 |
 Erythromycin resistance protein/ABC transporter | lpg1616 | uup | 1.86 | 1.61 |  |
 Multidrug resistance protein/efflux pump | lpg0257 |  | 2.67 | 3.09 |  |
 Multidrug resistance protein/efflux pump | lpg0429 | oprM | 1.12 | 1.65 |  |
 Multidrug resistance protein/efflux pump | lpg2189 | ygjT | 1.76 | 2.28 | −1.85 |
Viral functions/phage/transposases | Â | Â | Â | Â | Â |
 Prophage regulatory protein | lpg2563 |  | 1.22 |  |  |
 Transposase | lpg2120 |  |  | 2.01 |  |
 Transposase | lpg2363 |  | 1.65 |  |  |