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Table 2 PAML analyses of candidate and ZP genes with M7 & M8 models

From: Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

Species Gene ID Ka/Ks EST length M7 vs. M8 Sites under selection
S. goodei, S. saxicola, S. caurinus, and S. rastrelliger fkb12 1.342 201 14.733 22 (0.997**), 45 (0.952*), 48(0.971*), 53 (0.997**), and 67 (0.992**)
S. goodei, S. saxicola, S. caurinus, and S. rastrelliger r19 1.432 300 Not-Significant N/A
S. goodei, S. saxicola, S. caurinus, and S. rastrelliger taf12 0.372 231 Not-Significant N/A
S. goodei, S. saxicola, S. caurinus, and S. rastrelliger tm50a 2.163 279 20.773 90 (0.996*), 91 (0.977*), 92 (0.977*), and 93 (0.958*)
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus cox5a 0.04 297 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus cp058 0.252 294 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus cwc15 0.067 336 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus if2g 0.116 420 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus ino1a 0.142 456 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus ls14b 3.62 396 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus pri2 0.376 333 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus sirt5 0.174 297 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus tm50a 0.214 231 Not-Significant 50 (0.994**)
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus tsn 0.129 237 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus znhi3 0.222 282 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus zpax 0.295 477 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus zpb 0.248 663 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus zpc1 0.368 567 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus zpc4 0.437 315 Not-Significant N/A
S. goodei, S. saxicola, Oryzias latipes, and Oreochromis niloticus zpc5 0.275 483 Not-Significant N/A
  1. M7 and M8 models were compared with the likelihood ratio test and Ka/Ks values were averaged between the two models. Sites that were found under positive selection are presented with only the Bayes Empirical Bayes (BEB) analyses. Posterior probabilities are labeled as * and ** for P > 95 % and P > 99 %, respectively