Fig. 5
From: Genomic consequences of selection and genome-wide association mapping in soybean
The visualization of the GWAS results and selection signals for selection trait (seed coat color). a Manhattan plots of MLM for seed coat color. The − log10 P-values from a genome-wide scan are plotted against the position on each of the 20 chromosomes. The horizontal red line indicates the genome-wide significance threshold (FDR < 0.05). b Gene diversity (H i ) of genomic regions showing strong association signal on Chromosome 8. c XP-CLR and regional GWAS signals near CHS; gene orientation is indicated by the arrow. d Quantile-quantile (QQ) plot of MLM model for seed coat color