Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis

Table 1 The sRNA pathway genes in Pinus tabuliformis

At gene	Locus	Pt homolog	NCBI NO.	Protein	Function
AtHST	At3g05040	PtHST	KJ711062	1195	Exprotin-5 homolog
AtHEN1	At4g29160	PtHEN1	KJ711060	977	sRNA-sprecific methyltransferase
AtDRB4	At3g62800	PtDRB4	KJ711042	550	nuclear dsRNA-binding protein
AtHYL1	At1g09700	PtHYL1	KJ711063	485	nuclear dsRNA-binding protein
AtSGS3	At5g23570	PtSGS3	KJ711106	776	Coiled-coil protein
AtRDR1	At1g14790	PtRDR1	KJ711100	1726	RNA-dependent RNA polymerase
AtRDR2	At4g11130	PtRDR2	KJ711101	1189	RNA-dependent RNA polymerase
AtRDR6	At3g49500	PtRDR6	KJ711102	1123	RNA-dependent RNA polymerase
AtDCL1	At1g01040	PtDCL1	KJ711036	2126	Rnase III
AtDCL2	At3g03300	PtDCL2	KJ711037	1435	Rnase III
AtDCL3	At3g43920	PtDCL3a	KJ711038	1871	Rnase III
AtDCL3	At3g43920	PtDCL3b	KJ711039	1792	Rnase III
AtDCL4	At5g20320	PtDCL4	KJ711040	1716	Rnase III
AtNRPD1a	At1g63020	PtNRPD1a	KJ711089	1856	DNA-dependent RNA polymerase
AtNRPD1b	At2g40030	PtNRPD1b	KJ711090	2530	DNA-dependent RNA polymerase
AtNRPD2	At3g23780	PtNRPD2	KJ711091	1348	DNA-dependent RNA polymerase
AtAGO1	At1g48410	PtAGO1	KJ710984	1144	RNA slice
AtAGO2	At1g31280	NA			RNA slice
AtAGO3	At1g31290	NA			RNA slice
AtAGO4	At2g27040	PtAGO4	KJ710986	930	RNA slice
AtAGO5	At2g27880	PtAGO5	KJ710987	1097	RNA slice
AtAGO6	At2g32940	PtAGO4	KJ710986	930	RNA slice
AtAGO7	At1g69440	PtAGO7	KJ710988	1127	RNA slice
AtAGO9	At5g21150	PtAGO4	KJ710986	930	RNA slice
AtAGO10	At5g43810	PtAGO10	KJ710985	955	RNA slice
AtCMT3	At1g69770	NA			Methyltransferase
AtDRM2	At5g15380	NA			Methyltransferase
AtMET1	A5t49160g	NA			Methyltransferase

ISSN: 1471-2164