Table 2 Experimental identified miRNA targets in P. tabuliformis
miRNA family | Target | Protein | Conserved target / miRNA sequence | Action sites |
|---|---|---|---|---|
miR156 | comp75271_c0_seq2 | PtSPL1 | [50] | Flowering |
miR156 | lw_isotig09062 | PtSPL3 | [50] | Flowering |
miR529 | comp85892_c0_seq1 | PtSPL2 | [76] | Flowering |
miR159 | lw_hbkxs4402jlyd6 | PtMYB33 | [51] | Flowering |
miR162 | comp74382_c0_seq3 | PtDCL1 | [52] | sRNA |
miR172 | comp64707_c0_seq1 | PtAP2L3 | [52] | Flowering |
miR172 | lw_isotig05156 | PtAP2L2 | [52] | Flowering |
miR172 | lw_isotig06154 | PtAP2L1 | [52] | Flowering |
miR319 | lw_isotig09509 | PtTCP2 | [53] | Flowering |
miR319 | lw_isotig09013 | PtERF1 | 5’-TTGGACTGAAGGGAGCTCC-3’ | |
miR166 | comp65619_c0_seq2 | PtHB3* | [77] | Vascular |
miR166 | comp78056_c0_seq1 | PtHB3* | [77] | Vascular |
miR166 | comp83755_c0_seq1 | PtHB4 | [77] | Vascular |
miR166 | lw_isotig05204 | PtHB2 | [77] | Vascular |
miR169 | comp77240_c0_seq3 | PtNF-YA7 | [78] | Root |
miR171 | comp65826_c0_seq1 | PtHAM1 | [79] | Meristem |
miR171 | lw_hbkxs4402gb5ou | PtHAM2 | [79] | Meristem |
miR391 | comp48694_c0_seq1 | unknown | 5’-TACGCAGGAGAGATGACACCG-3’ | |
miR391 | lw_isotig02711 | unknown | 5’-TACGCAGGAGAGATGACACCG-3’ | |
miR394 | lw_isotig14380 | PtKRF2 | [80] | Stem cell |
miR396 | comp57471_c0_seq2 | PtGRF2* | [31] | Flower/Pistil |
miR396 | comp73392_c0_seq1 | PtGRF1 | [31] | Flower/Pistil |
miR396 | lw_isotig04039 | PtGRF3 | [31] | Flower/Pistil |
miR408 | comp20033_c0_seq1 | PtSINAT1 | 5’-TGCACTGCCTCTTCCCTGGCT-3’ | |
miR408 | lw_isotig03980 | PtAPRN | 5’-TGCACTGCCTCTTCCCTGGCT-3’ | |
miR482 | comp10992_c0_seq1 | PtNBS1 | [81] | Defense |
miR482 | comp2059_c0_seq1 | unknown | 5’-TCTTTCCTACTCCTCCCA-3’ | |
miR482 | comp270247_c0_seq1 | unknown | 5’-TCTTCCCTACTCCTCCCATTCC-3’ | |
miR482 | comp43645_c0_seq1 | unknown | 5’-TTTCCTACTCCTCCCAAGCCCA-3’ | |
miR482 | comp57920_c0_seq1 | unknown | 5’-TTTCCTACTCCTCCCAAGCCCA-3’ | |
miR482 | comp59077_c0_seq2 | unknown | 5’-TCTTGCCTACCCCTCCCATTCC-3’ | |
miR482 | comp66603_c0_seq1 | unknown | 5’-TTTCCTACTCCTCCCAAGCCCA-3’ | |
miR482 | comp76079_c0_seq1 | unknown | 5’-TCTTCCCTACTCCTCCCATTCC-3’ | |
miR482 | comp80951_c0_seq5 | unknown | 5’-TTTCCTACTCCTCCCAAGCCCA-3’ | |
miR482 | lw_isotig06642 | PtKRF3 | 5’-TCTTCCCTACTCCTCCCATTCC-3’ | |
miR482 | lw_isotig09777 | unknown | 5’-TCTTCCCTACTCCTCCCATTCC-3’ | |
miR482 | lw_isotig12233 | unknown | 5’-TTCCCTATTCCTCCCATTCCTA-3’ | |
miR482 | lw_isotig17369 | unknown | 5’-TCTTCCCTACTCCTCCCATTCC-3’ | |
miR482 | lw_isotig25482 | unknown | 5’-TTTCCTACTCCTCCCAAGCCCA-3’ | |
miR946 | comp74586_c0_seq1 | un known | 5’-CAGCCCTTCTCCTATCCACAAC-3’ | |
miR947 | comp58863_c0_seq2 | unknown | 5’-CATCGGAATCTGTTACTGTTTC-3’ | |
miR947 | comp69066_c0_seq2 | unknown | 5’-CATCGGAATCTGTTACTGTTTC-3’ | |
miR947 | lw_hbkxs4402jaz6z | unknown | 5’-CATCGGAATCTGTTACTGTTTC-3’ | |
miR947 | lw_isotig08583 | unknown | 5’-CATCGGAATCTGTTACTGTTTC-3’ | |
miR949 | comp29204_c0_seq1 | unknown | 5’-TCTCCGGGAATCCAATGCGCCT-3’ | |
miR949 | comp4036_c0_seq1 | unknown | 5’-TCTCCGGGAATCCAATGCGCCT-3’ | |
miR950 | comp314883_c0_seq1 | NB-ARC | 5’-TAACATCTGGGCCACGAGGGTT-3’ | |
miR950 | lw_hbkxs4402g5r7f | unknown | 5’-TCACATCTGGGCCACGATGGTT-3’ | |
miR951 | comp77599_c0_seq2 | unknown | 5’-TGTTCTTGACGTCTGGACCACG-3’ | |
miR951 | comp79416_c0_seq1 | unknown | 5’-TGTTCTTGACGTCTGGACCACG-3’ | |
miR951 | comp79471_c2_seq6 | unknown | 5’-TCGGCCTCAAATGTTAGGAGAA-3’ | |
miR951 | lw_hbkxs4401es9bl | unknown | 5’-TGTTCTTGACGTCTGGACCACG-3’ | |
miR1311 | lw_isotig09685 | unknown | 5’-TCAGAGTTTTGCCAGTTCCGCC-3’ | |
miR1312 | comp141994_c0_seq1 | PtGRF2* | 5’-TTTGGAGAGAAAATGGCCACT-3’ | |
miR1312 | comp78456_c0_seq1 | PtHB1 | 5’-TTTGGAGAGAAAATGGCCACT-3’ | |
miR1313 | comp70891_c0_seq2 | PtLRK1 | 5’-TACCACTGAAATTATTGTTCG-3’ | |
miR1314 | comp14858_c0_seq1 | unknown | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1314 | comp47488_c0_seq1 | unknown | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1314 | comp62379_c0_seq1 | unknown | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1314 | comp66316_c0_seq1 | unknown | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1314 | comp67690_c0_seq1 | unknown | 5’-CCGGCCTCGAATGTTAGGAGA-3’ | |
miR1314 | comp77805_c0_seq6 | unknown | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1314 | comp78314_c0_seq1 | PtRNAase | 5’-CCGGCCTCAAATGTTAGGAGAA-3’ | |
miR1316 | lw_isotig01063 | PtLIP1* | 5’-TTCCATGCACAAACCATTGGA-3’ | |
miR1316 | lw_isotig22693 | PtLIP1* | 5’-TTCCATGCACAAACCATTGGA-3’ | |
miR1316 | lw_isotig25086 | PtLIP2 | 5’-TTCCATGCACAAACCATTGGA-3’ | |
miR1316 | lw_isotig25889 | PtLIP1* | 5’-TTCCATGCACAAACCATTGGA-3’ | |
miR1448 | lw_isotig17502 | unknown | 5’-TCTTTCCAACGCCTCCCATACC-3’ | |
miR2111 | lw_isotig01996 | PtKRF1 | 5’-TAATCTGCATCCTGAGGTTTG-3’ | |
miR2118 | comp35426_c0_seq1 | unknown | 5’-TTCCCTATTCCACCCATCCCAT-3’ | |
miR3710 | comp76797_c0_seq3 | unknown | 5’-TGAACAATGCCCACCCTTCATC-3’ | |
new | comp333751_c0_seq1 | unknown | 5’-TGACATTGTAAAATACGGGAAT-3’ | |
new | comp54693_c0_seq1 | unknown | 5’-TCAGGGCCTCGGTGGTTAATG-3’ | |
new | comp69194_c0_seq1 | PtmTERF1 | 5’-TAATGCTTCACCCTCAATGCC-3’ | |