Table 7 List of targets of differentially expressed novel miRNAs in post-meiotic and mature pollen libraries
From: Identification of novel small ncRNAs in pollen of tomato
| Â | mR | Target ID | Target annotation | FE | Tpm-N | Tpm H | Log2 | Fdr |
|---|---|---|---|---|---|---|---|---|
post-meiotic pollen | SL2.40ch12_12524 (21 nt) | Solyc02g071750.2.1 | Cyclic phosphodiesterase | −135.31 kcal/mol | 374.45 | 759.93 | 1.02 | 0.24 |
Solyc02g080670.2.1 | Laccase-22 (Multicopper oxidase) | 10.46 | 37.21 | 1.83 | 0.95 | |||
Solyc07g054730.1.1 | Wound-responsive protein | 23.10 | 30.34 | 0.39 | 0.95 | |||
Solyc01g007950.2.1 | Peroxidase 1 | 1657.51 | 734.30 | −1.17 | 0.95 | |||
Solyc12g095990.1.1 | ATP-dependent RNA helicase eIF4A | 698.37 | 682.61 | −0.03 | 1.00 | |||
Solyc04g011720.2.1 | Glucan endo-1 3-beta-glucosidase 5 | 21.02 | 19.86 | −0.08 | 1.00 | |||
Solyc12g020110.1.1 | DNA repair protein rad5 | 29.93 | 27.59 | −0.12 | 0.95 | |||
Solyc02g067040.2.1 | Unknown | 17.07 | 13.79 | −0.31 | 0.95 | |||
SL2.40ch09_6940 (21 nt) | Solyc04g082050.2.1 | Cellular retinaldehyde-binding | −84.1 kcal/mol | 33.75 | 43.80 | 0.38 | 0.95 | |
Solyc03g033320.2.1 | Prolyl 4-hydroxylase alpha | 8.54 | 7.60 | −0.17 | 0.98 | |||
Solyc06g073690.2.1 | Transducin family protein | 0.59 | 1.50 | 1.36 | 1.00 | |||
Solyc07g007890.2.1 | CCR4-NOT transcription complex | 93.87 | 122.73 | 0.39 | 0.95 | |||
Solyc11g008990.1.1 | Phage shock protein A PspA (PspA/IM30) | 24.38 | 18.43 | −0.40 | 0.95 | |||
Solyc04g064490.2.1 | Glycosyltransferase | 188.92 | 148.32 | −0.35 | 0.95 | |||
Solyc02g092230.2.1 | Adiponectin receptor 2 | 390.97 | 347.03 | −0.17 | 0.99 | |||
Solyc01g108650.2.1 | Unknown | 33.75 | 43.80 | 0.38 | 0.95 | |||
Mature pollen | SL2.40ch03_8525 (24 nt) | Solyc02g062570.2.1 | Dolichyldiphosphatase 1 | −56.10 kcal/mol | 3.98 | 16.12 | 2.02 | 1.00 |
Solyc06g084620.1.1 | Pectinesterase | 97384.21 | 103657.50 | 0.09 | 1.00 | |||
Solyc02g090180.2.1 | Oligopeptidase (Protease II) | 9.94 | 4.22 | −1.24 | 1.00 | |||
Solyc07g014700.2.1 | Dolichyl-diphosphooligosaccharide-protein glycosyltransferase | 409.76 | 304.51 | −0.43 | 1.00 | |||
Solyc02g081010.1.1 | Transcription factor jumonji | 39.63 | 72.87 | 0.88 | 0.39 | |||
Solyc03g093240.2.1 | GTP-binding protein YqeH (GTP-binding protein HSR1-related) | 2.73 | 1.43 | −0.94 | 1.00 | |||
Solyc09g011820.2.1 | Unknown | 6.34 | 13.52 | 1.09 | 1.00 | |||
SL2.40ch11_457 (24 nt) | Solyc01g094190.2.1 | dTDP-4-dehydrorhamnose reductase | −56.79 kcal/mol | 52.69 | 47.62 | −0.15 | 1.00 | |
Solyc01g090180.2.1 | Extradiol ring-cleavage dioxygenase class III protein | 5.83 | 3.78 | −0.62 | 1.00 | |||
Solyc01g087430.2.1 | PHD zinc finger-containing protein | 10.75 | 21.14 | 0.98 | 1.00 | |||
Solyc10g077040.1.1 | Magnesium-protoporphyrin IX monomethyl ester | 26.81 | 19.03 | −0.49 | 1.00 | |||
Solyc06g084440.2.1 | Nuclear protein localization 4 (NPL4) | 187.57 | 191.29 | 0.03 | 1.00 | |||
Solyc09g064860.2.1 | Ubiquitin system component Cue | 291.99 | 256.31 | −0.19 | 1.00 | |||
Solyc07g040980.2.1 | Unknown | 108.10 | 117.99 | 0.13 | 1.00 |