Table 2 Loci encoding well-characterized peptide products, which contain SNPs between the Serengeti-transformed stock and reference Muguga strain. Variants were also found in 47 hypothetical proteins (Additional file 2: Table S2)

TP01_0011

TpMuguga_01g00011^f

ABC transporter

11

_ / 2

9

11

≥66^f

≥14^f

TP02_0016

TpMuguga_02g00016^f

ABC transporter

13

_ / 2

2

2

≥21^f

≥7^f

TP02_0017

TpMuguga_02g00017^f

ABC transporter

12

_ / 3

19

17

≥11^f

≥8^f

TP02_0940

TpMuguga_02g00940^f

ABC transporter

12

_ / 1

1

≥0^f

≥0^f

TP02_0951

TpMuguga_02g00951^f

ABC transporter

11

_ / 1

44

37

≥9^f

≥2^f

TP03_0007

TpMuguga_03g00007^f

ABC transporter

11

_ / 1

7

4

≥11^f

≥9^f

TP03_0864

TpMuguga_03g00864

ABC transporter

13

_ / 2

5

3

10

6

TP04_0021

TpMuguga_04g00021^f

ABC transporter

13

_ / 1

10

24

≥43^f

≥23^f

TP02_0449

TpMuguga_02g00449

DNA replication factor CDT1 like

0

_ / 2

4

1

TP02_0448

TpMuguga_02g00448

F-box-like/WD repeat-containing protein TBL1XR1

0

_ / 1

1

1

TP03_0280

TpMuguga_03g00280

Papain family cysteine protease

1

_ / 2

12

7

1

1

TP04_0278

TpMuguga_04g00278

Translation initiation factor IF-2

1

S / 2

4

8

5

TP04_0279

TpMuguga_04g00279

Translation initiation factor IF-2

1

S / 2

1

3

TP04_0280

TpMuguga_04g00280^f

Translation initiation factor IF-2

1

S / 1

1

3

≥2^f

≥2^f