Skip to main content

Table 1 General features of the reads, contigs, and draft genome sequences of Lactobacillus fermentum 222 and L. plantarum 80

From: Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes

Statistics L. fermentum 222 L. plantarum 80
Reads
 Total bases 225,141,845 234,878,528
 Number of reads 571,369 621,544
 Average read length 394.65 378.34
 Median read length 435 416
Assembly
 Number of contigs 73 67
 N50 contigs 55,702 92,828
 Depth of coverage 104 65
 Average length 26,717 48,130
 Longest contig 159,496 312,995
Draft genome sequences  
 Estimated genome size (Mb)a 2.2 3.6
 Total contig length (bp) 1,950,408 3,224,773
 G+C content (%) 52.08 44.36
 Number of CDS 1,864 3,123
 Coding density (%) 83.00 83.00
 Average gene length (bp) 869 857
 Number of rRNA operonsb 6 5
 Number of tRNAs 54 67
  1. aEstimation according to Newbler
  2. bEstimation based on contig coverage
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us