Comparative genomic analysis of Leishmania (Viannia) peruviana and Leishmania (Viannia) braziliensis

BMC Genomics

Table 1 Top ten high SNP count genes in two L. (V.) peruviana isolates

Gene ID	Annotation	Number of SNP	Gene length	CN PAB LEM
LbrM.33.3060	Hypothetical proteins	135	14,943	0.97	0.87
LbrM.30.2340		83	11,340	0.98	0.75
LbrM.34.5330		82	19,875	1.07	1.25
LbrM.16.0180		69	13,302	0.82	0.79
LbrM.35.1580		68	16,767	1.01	0.76
LbrM.14.0770		63	12,570	0.68	0.39
LbrM.35.3160		43	12,582	1.05	0.98
LbrM.30.2160	Endosomal trafficking protein RME-8, putative	40	7335	1.20	1.19
LbrM.02.0130	Phosphatidylinositol kinase related protein, putative	39	14,775	0.51	0.47
LbrM.30.1620	protein kinase, putative	38	5112	1.30	1.23

Top ten genes showing high SNP differences in L. (V.) peruviana compared with L. (V.) braziliensis orthologs. Number of SNP and gene length are presented in nucleotides. Copy number (CN) estimated for the haploid genome of PAB-4377 (PAB) and LEM-1537 (LEM)

ISSN: 1471-2164