Table 6 Summary of assembly likelihood (ALE) results
From: An improved genome reference for the African cichlid, Metriaclima zebra
M_zebra_v0 | M_zebra_UMD1 | |
|---|---|---|
Illumina short insert library | ||
#Total Placed Reads | 384,925,943 | 390,482,375 |
# Unmappable Bases | 132,637,543 | 57,405,631 |
# Unmappable Regions | 57,998 | 14,063 |
Bases with 0 Coverage | 139,693,095 | 121,246,622 |
Illumina 2–3 kb insert library | ||
#Total Placed Reads | 320,493,115 | 341,717,744 |
# Unmappable Bases | 133,188,276 | 56,563,974 |
# Unmappable Regions | 58,324 | 14,069 |
Bases with 0 Coverage | 143,109,574 | 121,181,395 |
Illumina 40 kb insert library | ||
#Total Placed Reads | 20,487,153 | 22,971,340 |
# Unmappable Bases | 144,670,975 | 60,104,659 |
# Unmappable Regions | 73,341 | 25,254 |
Bases with 0 Coverage | 518,909,366 | 492,713,889 |
16.5× PacBio library | ||
#Total Placed Reads | 2,703,712 | 2,794,402 |
Average Read Length (bp) | 3,772 | 4,258 |
Average Read Overlap (bp) | 3,453 | 3,886 |
# Unmappable Bases | 82,472,941 | 45,023,176 |
# Unmappable Regions | 18,363 | 6,349 |
Bases with 0 Coverage | 114,035,849 | 65,141,623 |