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Table 9 Petunia homologs of plastochron-related genes from Arabidopsis

From: Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.

   

Tissue type

Unigene identifier

Annotation

Coveragea

Flower

Shoot apices

Seedlings

Trichomes

Paxi_locus_37_Transcript_7/9_Length_3129b

AMP1c

++

16.7e

41.8

30.1

13.6

Pexs_locus_18730_Transcript_7/8_Length_2607

AMP1

++

23.4

46.4

14.2

32.6

Pint_locus_21727_Transcript_1/5_Length_1316

AMP1d

-

6.2

21.9

8.9

3.8

Pint_locus_22203_Transcript_1/2_Length_1109

AMP1

-

5.1

13.8

8.9

3.4

Paxi_locus_7774_Transcript_1/1_Length_3771

SLOMO

++

26.7

22.2

23.7

20.3

Pexs_locus_3846_Transcript_1/2_Length_3848

SLOMO

++

29.7

24.2

19.9

25.6

Pint_locus_6038_Transcript_3/3_Length_3716

SLOMO

++

28.1

31.6

26

25.4

Paxi_locus_28305_Transcript_3/3_Length_4072

ER

++

33.9

81.5

22.2

29.4

Pexs_locus_27971_Transcript_3/3_Length_4072

ER

++

22.8

55.5

8.0

66.5

Pint_locus_23938_Transcript_2/6_Length_3741

ER

++

21.7

113

35.3

37.3

Paxi_locus_17737_Transcript_3/3_Length_3550

ERL1

++

13.1

33.1

4.3

62.8

Pexs_locus_28063_Transcript_1/2_Length_3819

ERL1

-

7.8

16

1.3

54.8

Pint_locus_64973_Transcript_1/10_Length_3648

ERL1

++

5.4

33

6.9

118.8

Paxi_locus_17054_Transcript_3/3_Length_2365

PIN1

++

26.3

42.8

17.3

14.1

Pexs_locus_18753_Transcript_1/1_Length_2550

PIN1

++

16.7

40.5

11.6

27.3

Pint_locus_7020_Transcript_2/7_Length_2155

PIN1

+

29

51.5

35.9

12

Paxi_locus_4307_Transcript_1/3_ Length_2763

PIN3

++

28.5

13.8

24.6

23.3

Pexs_locus_32081_Transcript_2/3_Length_2800

PIN3

++

23.0

20.8

17.1

19.0

Pint_locus_15123_Transcript_1/7_Length_3107

PIN3

++

56.6

35.6

146.5

27.8

Paxi_locus_2898_Transcript_1/1_Length_2484

TEL1

++

0.6

11

0.5

2.5

Pexs_locus_31850_Transcript_1/1_Length_2212

TEL1

+

0

9.7

0.8

10.8

Pint_locus_19236_Transcript_1/3_Length_2722

TEL1

++

0

9.3

0.9

2.0

Paxi_locus_11865_Transcript_1/1_Length_1775

KLU

++

5.7

46.1

11.2

6.6

Pexs_locus_32423_Transcript_1/1_Length_2010

KLU

+

3.2

29.2

5.4

17.8

Pint_locus_55018_Transcript_1/1_Length_1785

KLU

+

4.0

52.5

13.1

8.6

Paxi_locus_2128_Transcript_1/2_Length_3063

SERf

++

41.3

84.5

53.5

51.4

Pexs_locus_1424_Transcript_1/1_Length_2854

SER

++

31.7

63.8

31.5

54.2

Pint_locus_294_Transcript_1/3_Length_2067

SER

-

30.7

78.5

43.9

38

Paxi_locus_23917_Transcript_1/1_Length_2956

SER

-

1.7

9.2

2.8

2.2

Pexs_locus_14709Transcript_1/1_Length_2964

SER

++

1.8

10

1.8

7.6

Pint_locus_12396_Transcript_1/3_Length_2121

SER

-

2.4

19.1

4.3

5.4

Paxi_locus_1735_Transcript_5/6_Length_4646

SPL1

++

77.4

37.3

43.8

44.9

Pexs_locus_1184_Transcript_1/1_Length_3442

SPL1

++

17.7

21.8

8.2

18.2

Pint_locus_16_Transcript_3/5_Length_3091

SPL1

++

76.5

64.3

51.4

65.8

Paxi_locus_34631_Transcript_2/2_Length_962

SPL3

++

14.7

8.2

1.9

5.2

Pexs_locus_31900_Transcript_1/1_Length_1186

SPL3

-

294.9

110.5

220.0

183.8

Pint_locus_74351_Transcript_1/6_Length_1207

SPL3

-

21.1

32.1

4.5

14.9

Paxi_locus_11501_Transcript_1/4 _Length_1639

SPL9

++

36.5

33.1

3.9

11.9

Pexs_locus_21068_Transcript_1/2_Length_1577

SPL9

++

26.4

33.2

2.4

49.7

Pint_locus_21057_Transcript_2/3_Length_1378

SPL9

++

22.7

42.7

3.5

9.0

Paxi_locus_30395_Transcript_1/2_Length_1427

SPL15

++

3.5

34.1

1.4

3.5

Pexs_locus_31561_Transcript_1/1_Length_1265

SPL15

++

3.1

20.5

1.2

19.8

Pint_locus_74440_Transcript_1/2_Length_1316

SPL15

++

2.3

28.2

1.3

3.4

Pax_locus_6323_Transcript_2/3_Length_3369

ML5

++

6.5

10.2

8.0

8.6

Pexs_locus_16730_Transcript_1/2_Length_3261

ML5

++

7.1

10.7

5.7

11.2

Pint_locus_1362_Transcript_3/3_Length_3267

ML5

++

6.5

13.1

8.4

9.7

  1. aCoverage refers to whether a unigene encodes a predicted full-length protein (++), is truncated by ~ 20 amino acids or less (+), or is truncated by greater than 20 amino acids (−)
  2. bThe designation Paxi, Pexs and Pint refer to unigenes derived from P. axillaris, P. exserta and P. integrifolia, respectively
  3. cGene symbols are as follows: ALTERED MERISTEM PROGRAM 1 (AMP1), SLOW MOTION (SLOMO), ERECTA (ER), ERECTA LIKE 1 (ERL1), PIN FORMED 1 (PIN1), TERMINAL EAR LIKE 1 (TEL1), KLUH (KLU), SERRATE (SER), SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL), PIN FORMED 3 (PIN3), MEI2-LIKE PROTEIN 5 (ML5)
  4. dTwo fragmented unigenes corresponding to AMP1 are present within the P. integrifolia transcriptome
  5. eTranscript abundance was determined by RNAseq and data is presented as Fragments Per Kilobase of transcript per Million mapped reads
  6. fTwo paralogs with homology to SERRATE are present within each Petunia transcriptome
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BMC Genomics

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