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Table 2 Attributes of data used for training and prediction in Avishkar

From: MicroRNA target prediction using thermodynamic and sequence curves

 

# Positive examples (Seed:Seedless)

# Negative examples

# mRNA

# miRNA

# Positive target sites in

     

3’ UTR

CDS

5’ UTR

HITS-CLIP (Mouse)

861,208 (6 %:94 %)

35,608,333

4,059

119

478,138 (≈56 %)

367,371 (≈43 %)

15,699 (≈1 %)

PAR-CLIP (Human)

141,109 (8 %:92 %)

2,659,748

1,211

35

80,775 (≈57 %)

55,250(≈39 %)

5,084 (≈4 %)

  1. For both mouse and human data, most of the positive miRNA target sites are found in the 3’ UTR region, followed by the CDS region, with very few target sites located in the 5’ UTR region
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BMC Genomics

ISSN: 1471-2164

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