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Table 4 Circadian clock genes, their role in the clock, properties of their Wyeomyia smithii transcripts and their relationship to homologs in Drosophila melangaster and Aedes aegypti

From: Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii

Genea Transcriptb A. aegypti AAEL- c E-valued ProtTest Model FBgn- Ortho DB EOG7-e Nucleo- tides Relative Rate
CkIIα 15735 012094 0 Dayhoff+G+F 0264492 4RCF1 451 0.102
Clk 2GK8YT 012562 0 JTT+G+F 0023076 NSNR1 1,865 0.679
cry2 05165 002602 4E-173 LG+G --- P64PH 634 0.298
Cul3 07535 006291 007187 0 LG+G 0261268 TN9FJ 1,771 0.348
cwo 15437 010513 0 LG+G+F 0259938 XDP58 2,313 1.792
cyc 17314 002049 7 E-86 JTT+G 0023094 7TBTD 851 0.390
dbt 08662 002226 1E-144 JTT+G 0002413 2CGPS 527 0.866
jet 03197 012126 1 E-93 LG+G+F 0031652 NSNRX 1,004 1.572
kayα 13013 008953 8 E-145 LG+G+F 0001297 06BFN 1,162 1.625
nmo 17870 004797 0 JTT+G 0011817 JF2MQ 2,130 0.254
Pdp1 02480 005255 8 E-145 LG+I 0016694 2RZNP 3,083 0.602
per 1A331S 008141 1 E-76 JTT+G 0003068 MHBMZ 2,670 1.500
PP2A-B' 04554 014031 0 LG+G 0042693 S57VZ 721 0.463
sgg 17080 005238 0 Dayhoff + G 0003371 D2S3R 2641 0.455
slimb 03120 003371 0 JTT+G 0023423 WHV0D 2,355 0.559
tim 06527 006411 1 E-61 JTT+G+F 0014396 DG81S 2,752 0.793
vri 08372 011371 7 E-133 JTT+I+G+F 0173452 HXQF6 2,465 1.234
  1. aBold font, TTFL; regular font, PTM
  2. bContigs in Roman; singletons in italics, omitting the prefix F5BTJ3O0-
  3. c Aedes aegypti BLAST to W. smithii transcriptome
  4. dE-values from reciprocal BLAST of contig or singleton to A. aegypti
  5. eRooted at most-recent common ancestor of Hymenoptera & Diptera