Skip to main content

Table 2 Genes in the QTL sequences annotated in silico with the gene ontology term “defense response”

From: Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Seq. name Seq. description Closest matching NCBI nr protein
cbr1_scaffold114-gene-0.3-mRNA-1 Transcription factor tga1 Transcription factor TGA1 (Vitis vinifera)
cbr1_scaffold134-gene-0.0-mRNA-1 cc-nbs-lrr resistance protein Putative disease resistance protein RGA3 (Vitis vinifera)
cbr1_scaffold16-gene-0.12-mRNA-1 rna recognition motif-containing protein PREDICTED: DAZ-associated protein 1-like (Vitis vinifera)
cbr1_scaffold17-gene-0.29-mRNA-1 Beta-hydroxyacyl-acp dehydratase Predicted protein (Populus trichocarpa)
cbr1_scaffold28-gene-0.12-mRNA-1 Transcription factor tga1 TGA transcription factor 1 (Populus tremula x Populus alba)
cbr1_scaffold32-gene-0.28-mRNA-1 14-3-3-like protein gf14 lambda Hypothetical protein ARALYDRAFT_496774 [Arabidopsis lyrata subsp. lyrata)
cbr1_scaffold4-gene-0.38-mRNA-1 Multicatalytic endopeptidase complex Proteasome subunit alpha type-7 (Vitis vinifera)
cbr1_scaffold61-gene-0.11-mRNA-1 Disease resistance protein at4g27190-like PREDICTED: disease resistance protein At4g27190-like (Vitis vinifera)
cbr2_scaffold29-gene-0.6-mRNA-1 cc-nbs-lrr resistance protein cc-nbs-lrr resistance protein (Populus trichocarpa)
cbr2_scaffold34-gene-0.3-mRNA-1 Feronia receptor-like kinase Serine/threonine-protein kinase PBS1, putative (Ricinus communis)
cbr2_scaffold3-gene-0.42-mRNA-1 Protein PREDICTED: MLO protein homolog 1-like (Glycine max)
cbr2_scaffold5-gene-0.9-mRNA-1 Transferring glycosyl Transferase, transferring glycosyl groups, putative (Ricinus communis)
cbr3_scaffold1-gene-1.1-mRNA-1 Histone-lysine n-methyltransferase ashh2-like PREDICTED: uncharacterized protein LOC100245350 (Vitis vinifera)
cbr3_scaffold1-gene-1.19-mRNA-1 Set domain protein PREDICTED: uncharacterized protein LOC100245350 (Vitis vinifera)
cbr3_scaffold28-gene-0.8-mRNA-1 Cysteine proteinase rd19a Cysteine proteinase RD19a (Arabidopsis thaliana)