Table 3 Examples of duplicated candidate genes within LD blocks associated with yield
Chromosome | Marker at association peak | -loglO(p) | Candidate gene | Gene description | distance [kbp] |
|---|---|---|---|---|---|
chrA03 | Bn-A03-p21075664 | 3.44 | BnaA03g39700D | methylthioalkylmalate synthase | 26.91 |
| Â | Bn-A03-p21075664 | 3.44 | BnaA03g39710D | methylthioalkylmalate synthase | 24.05 |
| Â | Bn -A03-p21075664 | 3.44 | BnaA03g39720D | methylthioalkylmalate synthase | 18.82 |
| Â | Bn-A03-p21075664 | 3.44 | BnaA03g39790D | methylthioalkylmalate synthase | 4.24 |
| Â | Bn-A03-p21075664 | 3.44 | BnaA03g39860D | protein cobra-like | 74.66 |
chrA04 | Bn-A04-p9991606 | 4.05 | BnaA04gl3120D | cytochrome p450 | 12.10 |
| Â | Bn-A04-p9991606 | 4.05 | BnaA04gl3160D | cytochrome p450 71b2 | 8.10 |
chrA09 | Bn-A09-pl670189 | 5.50 | BnaA09g02980D | glutamate receptor | 640.82 |
| Â | Bn-A09-pl670189 | 5.50 | BnaA09g02990D | glutamate receptor | 656.01 |
| Â | Bn-A09-pl670189 | 5.50 | BnaA09g03000D | glutamate receptor | 659.35 |
| Â | Bn-A09-pl670189 | 5.50 | BnaA09g03020D | glutamate receptor | 663.14 |
| Â | Bn-A09-pl670189 | 5.50 | BnaA09g03560D | cysteine synthase d2 | 73.83 |
| Â | Bn-A09-pl670189 | 5.50 | BnaA09g03580D | cysteine synthase d2 | 70.07 |
| Â | Bn-A09-p3047090 | 3.97 | BnaA09g05570D | protein cobra-like | 213.15 |
chrC02 | Bn-scaff_17109_l-p683400 | 3.68 | BnaC02g38580D | glutamate receptor | 110.57 |
| Â | Bn-scaff_17109_l-p683400 | 3.68 | BnaC02g38590D | glutamate receptor | 107.50 |
chrC04 | Bn-scaff_15798_l-p725659 | 4.25 | BnaC04g36000D | gdsl esterase lipase at2g23540-like | 3.17 |
chrC07 | Bn-scaff_17326_l-p536514 | 4.23 | BnaC07gl0060D | cytochrome p450 | 310.08 |
| Â | Bn-scaff_17326_l-p536514 | 4.23 | BnaC07gl0090D | cytochrome p450 | 315.95 |
| Â | Bn-scaff_17326_l-p536514 | 4.23 | BnaC07gl0250D | gdsl esterase lipase | 611.35 |
| Â | Bn-scaff_17326_l-p536514 | 4.23 | BnaC07gl0260D | gdsl esterase lipase | 614.33 |
| Â | Bn-scaff_17326_l-p536514 | 4.23 | BnaC07gl0320D | gdsl esterase lipase | 617.31 |
| Â | Bn-scaff_16069_l-p3940746 | 3.77 | BnaC07g39560D | protein trichome birefringence-like 18 | 0.79 |
chrC08 | Bn-scaff_16069_l-p3940746 | 3.77 | BnaC08g20710D | protein trichome birefringence-like 18 | 1.13 |
chrC09 | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g02400D | glutamate receptor | 1501.80 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g02410D | glutamate receptor | 1481.75 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g02430D | glutamate receptor | 1476.34 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g02940D | cysteine synthase d2 | 1164.69 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g02970D | cysteine synthase d2 | 1160.62 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g05090D | protein cobra-like | 148.92 |
| Â | Bn-scaff_19783_l-p379086 | 5.36 | BnaC09g05120D | protein cobra-like | 156.02 |