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Table 1 The numbers of lncRNAs in individual RNA-seq datasets of different N. lugens strains/populations and in the comprehensive RNA-seq dataset

From: Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens

lncRNA typesa lncRNA in 12 samples Fecundityd Virulence Populations
Number of lncRNA Percentage (%) LFPb adult 2 d HFPb adult 2 d LFP 5th instar larva HFP 5th instar larva Mudgoc fat body TN1c fat body Mudgo salivary gland TN1 salivary gland TN1 antenna I87ic population C89ic population Wild population
Intergenic1 853 34.97 344 534 440 536 694 682 739 727 569 603 560 496
Intronic2 80 3.28 30 42 38 41 57 56 70 67 55 57 49 53
Intronic overlap3 (āˆ’) 5 0.21 1 3 0 1 4 4 5 5 2 4 4 3
Exonic overlap4 (+) 385 15.79 151 250 215 247 311 310 323 332 305 287 271 255
Exonic overlap5 (āˆ’) 211 8.65 78 137 117 147 175 176 188 187 153 147 145 139
Splice junction overlap6 264 10.28 103 172 150 175 218 221 227 226 199 197 190 188
Unclassified7 641 26.28 241 424 364 416 528 526 559 537 515 511 502 484
total 2,439 100 948 1,562 1,324 1,563 1,987 1,975 2,111 2,081 1,798 1,806 1,721 1,618
  1. aLncRNA types: 1) Intergenic transcript, 2) falling entirely within a reference intron, 3) overlaps with a reference intron on the opposite strand, 4) overlaps with a reference exon, 5) overlaps with a reference exon on the opposite strand, 6) At least one splice junction is shared with a reference transcript, 7) Unclassified
  2. b LFP low fecundity population, HFP high fecundity population
  3. c TN1: avirulent Taichung Native 1 host strain, Mudgo: virulent (carrying the resistance gene bph1) host strain, I87i Izumo87 strain, C89i: Chikugo89 strain
  4. dBased on the analysis of the 12 RNA-seq datasets together using the computational pipeline developed