Fig. 3
From: Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken
MtDNA phylogeny and network analysis of EAV-HP integration sites. Analysis of mitochondrial sequences from each bird clearly segregates birds from each Ethiopian population and the Pirbright lines, and places the Silkie and Taiwanese chickens as having close maternal ancestry to the red junglefowl (a). The network (b) from a distance matrix of integration sites present in each bird is largely consistent with this phylogeny. The colours on the phylogeny relate to branch probabilities, whilst those on the network diagram relate to breed and line