Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit

BMC Genomics

Table 1 Sequenced isolates of C. sakazakii French NICU outbreak 1994 and SNP typing

C. sakazakii strain	Genbank accession	Pulsotype	Sequence type^a	Neonate	Symptoms	Isolation date (1994)	Day	Isolation site	SNP differences from index strain
699	JOLK00000000	1	12	A	No details	23-Mar	1	Trachea	Index strain
703	JOLY00000000	1	12	B	NECII	25-Apr	34	Trachea	63
708	JOLZ00000000	1	12	C	No-symptoms	09-May	48	Trachea	52
696	JOLW00000000	1	12	D	NECII	08-Jun	78	Stools	14
690	JOLN00000000	1	12	E	No-symptoms	19-Jun	89	Stools	64
701	LCWW00000000	2	4	F	NEC III (died)	07-Apr	1	Peritoneal fluid	Index strain
691	JOLQ00000000	2	4	G	No details	19-Apr	12	Sputum	9
767	JNCX00000000	2	4	H	Meningitis (died)	11-May	34	Trachea	38
709	JOLJ00000000	2	4	C	Septicaemia	12-May	35	Trachea	13
705	JOLI00000000	2	4	B	NEC II	24-May	47	Trachea	339
695	JOLG00000000	2	4	J	NEC II (died)	07-Jun	61	Trachea	11
706	JOLH00000000	2	4	B	NEC II	09-Jun	63	Stools	304
692	JOLV00000000	2	4	L	NEC II	13-Jun	67	Stools	15
702	JOLF00000000	2	4	K	NEC I	13-Jun	67	Stools	10
694	JOLM00000000	2	4	M	NEC II	14-Jun	68	Conjunctivae	8
712	JOLE00000000	2	4			17-Jun	71	Prepared formula	6
707	JOLD00000000	2	4	B	NEC II	26-Jun	80	Skin	337
711	JOLC00000000	2	4	O	Asymptomatic	27-Jun	81	Stools	14
730	JOLT00000000	2	4	K	NEC I	27-Jun	81	Stools	10
698	JOLR00000000	2	4	D	NEC II	01-Jul	85	Stools	10
700	JOLL00000000	3	13	P	Digestive problems	15-Jun	1	Stools	Index strain
693	JOLO00000000	3	13	Q	Asymptomatic	18-Jun	3	Stools	4
713	JOLX00000000	3	13			20-Jun	5	End of bottle	4
714	JOLU00000000	3	13			27-Jun	12	End of bottle	3
715	JOLP00000000	3	13			27-Jun	12	Prepared formula	3
716	JOLS00000000	4	14			11-Jul		Infant formula