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Table 1 Sequenced isolates of C. sakazakii French NICU outbreak 1994 and SNP typing

From: Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit

C. sakazakii strain Genbank accession Pulsotype Sequence typea Neonate Symptoms Isolation date (1994) Day Isolation site SNP differences from index strain
699 JOLK00000000 1 12 A No details 23-Mar 1 Trachea Index strain
703 JOLY00000000 1 12 B NECII 25-Apr 34 Trachea 63
708 JOLZ00000000 1 12 C No-symptoms 09-May 48 Trachea 52
696 JOLW00000000 1 12 D NECII 08-Jun 78 Stools 14
690 JOLN00000000 1 12 E No-symptoms 19-Jun 89 Stools 64
701 LCWW00000000 2 4 F NEC III (died) 07-Apr 1 Peritoneal fluid Index strain
691 JOLQ00000000 2 4 G No details 19-Apr 12 Sputum 9
767 JNCX00000000 2 4 H Meningitis (died) 11-May 34 Trachea 38
709 JOLJ00000000 2 4 C Septicaemia 12-May 35 Trachea 13
705 JOLI00000000 2 4 B NEC II 24-May 47 Trachea 339
695 JOLG00000000 2 4 J NEC II (died) 07-Jun 61 Trachea 11
706 JOLH00000000 2 4 B NEC II 09-Jun 63 Stools 304
692 JOLV00000000 2 4 L NEC II 13-Jun 67 Stools 15
702 JOLF00000000 2 4 K NEC I 13-Jun 67 Stools 10
694 JOLM00000000 2 4 M NEC II 14-Jun 68 Conjunctivae 8
712 JOLE00000000 2 4    17-Jun 71 Prepared formula 6
707 JOLD00000000 2 4 B NEC II 26-Jun 80 Skin 337
711 JOLC00000000 2 4 O Asymptomatic 27-Jun 81 Stools 14
730 JOLT00000000 2 4 K NEC I 27-Jun 81 Stools 10
698 JOLR00000000 2 4 D NEC II 01-Jul 85 Stools 10
700 JOLL00000000 3 13 P Digestive problems 15-Jun 1 Stools Index strain
693 JOLO00000000 3 13 Q Asymptomatic 18-Jun 3 Stools 4
713 JOLX00000000 3 13    20-Jun 5 End of bottle 4
714 JOLU00000000 3 13    27-Jun 12 End of bottle 3
715 JOLP00000000 3 13    27-Jun 12 Prepared formula 3
716 JOLS00000000 4 14    11-Jul   Infant formula  
  1. aForsythe et al. [2]
  2. NEC necrotizing enterocolitis