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Table 2 Differentially expressed miRNAs in response to 5 % linseed oil or 5 % safflower oil treatments

From: Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil

miRNA Linseed treatment Safflower treatment
  Log2FC1 FC2 logCPM3 P-value FDR4 Log2FC FC logCPM P-value FDR
bta-miR-148b 0.365 1.288 12.16 0.001 0.028 0.604 1.520 12.31 0.000 0.001
bta-miR-199a-3p 0.558 1.472 12.05 0.000 0.000 0.857 1.811 12.11 0.000 0.000
bta-miR-199c 0.589 1.504 7.93 0.000 0.000 0.984 1.977 7.99 0.000 0.000
bta-miR-21-5p 0.352 1.277 15.46 0.001 0.031 0.653 1.572 15.36 0.000 0.000
bta-miR-378 0.414 1.332 8.76 0.001 0.031 0.736 1.666 8.85 0.000 0.000
bta-miR-98 0.505 1.419 8.98 0.000 0.002 0.796 1.736 8.95 0.000 0.000
bta-miR-152 - - - - - 0.551 1.465 10.62 0.000 0.002
bta-miR-16a - - - - - 0.529 1.443 8.60 0.001 0.011
bta-miR-28 - - - - - 0.525 1.439 9.59 0.000 0.004
bta-miR-34a - - - - - 0.940 1.919 5.87 0.001 0.011
bta-miR-145 - - - - - −0.473 −1.388 13.29 0.002 0.029
bta-miR-99a-5p - - - - - −0.487 −1.402 15.32 0.000 0.004
bta-miR-196a 0.444 1.361 6.07 0.002 0.050 - - - - -
bta-miR-23b-3p 0.401 1.320 10.77 0.001 0.031 - - - - -
bta-miR-3431 0.532 1.446 6.36 0.002 0.049 - - - - -
bta-miR-4286 0.787 1.725 4.18 0.000 0.000 - - - - -
bta-miR-885 0.782 1.719 4.80 0.001 0.035 - - - - -
bta-miR-200a −0.470 −1.385 13.85 0.000 0.001 −0.521 −1.435 13.99 0.000 0.000
bta-miR-335 −0.581 −1.496 6.95 0.000 0.020 - - - - -
bta-miR-2299-5p −0.890 −1.853 3.76 0.001 0.028 - - - - -
bta-miR-125b - - - - - −0.563 −1.477 13.09 0.001 0.016
bta-miR-99b - - - - - −0.573 −1.488 11.43 0.001 0.012
bta-miR-125a - - - - - −0.574 −1.489 12.22 0.002 0.032
bta-miR-96 - - - - - −0.606 −1.522 11.60 0.000 0.000
bta-miR-484 - - - - - −0.709 −1.635 7.79 0.000 0.005
bta-miR-1388-5p - - - - - −0.749 −1.681 6.81 0.000 0.006
bta-miR-342 - - - - - −0.830 −1.778 8.75 0.000 0.004
bta-miR-4863 - - - - - −1.754 −3.373 7.94 0.000 0.000
bta-miR-1271 - - - - - −2.262 −4.797 6.61 0.000 0.009
  1. 1Log2FC: log2 fold change; 2FC: fold change; 3logCPM: log2-counts per million; 4Benjaminin Hochberg FDR p-values.
  2. The miRNAs in bold are among core differentially expressed miRNAs which were found in both treatments.
  3. bta-miR-486 was also found to be differentially expressed at day + 7 as compared to day-14 in safflower treatment
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BMC Genomics

ISSN: 1471-2164

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