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Table 2 Differentially expressed miRNAs in response to 5 % linseed oil or 5 % safflower oil treatments

From: Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil

miRNA

Linseed treatment

Safflower treatment

 

Log2FC1

FC2

logCPM3

P-value

FDR4

Log2FC

FC

logCPM

P-value

FDR

bta-miR-148b

0.365

1.288

12.16

0.001

0.028

0.604

1.520

12.31

0.000

0.001

bta-miR-199a-3p

0.558

1.472

12.05

0.000

0.000

0.857

1.811

12.11

0.000

0.000

bta-miR-199c

0.589

1.504

7.93

0.000

0.000

0.984

1.977

7.99

0.000

0.000

bta-miR-21-5p

0.352

1.277

15.46

0.001

0.031

0.653

1.572

15.36

0.000

0.000

bta-miR-378

0.414

1.332

8.76

0.001

0.031

0.736

1.666

8.85

0.000

0.000

bta-miR-98

0.505

1.419

8.98

0.000

0.002

0.796

1.736

8.95

0.000

0.000

bta-miR-152

-

-

-

-

-

0.551

1.465

10.62

0.000

0.002

bta-miR-16a

-

-

-

-

-

0.529

1.443

8.60

0.001

0.011

bta-miR-28

-

-

-

-

-

0.525

1.439

9.59

0.000

0.004

bta-miR-34a

-

-

-

-

-

0.940

1.919

5.87

0.001

0.011

bta-miR-145

-

-

-

-

-

−0.473

−1.388

13.29

0.002

0.029

bta-miR-99a-5p

-

-

-

-

-

−0.487

−1.402

15.32

0.000

0.004

bta-miR-196a

0.444

1.361

6.07

0.002

0.050

-

-

-

-

-

bta-miR-23b-3p

0.401

1.320

10.77

0.001

0.031

-

-

-

-

-

bta-miR-3431

0.532

1.446

6.36

0.002

0.049

-

-

-

-

-

bta-miR-4286

0.787

1.725

4.18

0.000

0.000

-

-

-

-

-

bta-miR-885

0.782

1.719

4.80

0.001

0.035

-

-

-

-

-

bta-miR-200a

−0.470

−1.385

13.85

0.000

0.001

−0.521

−1.435

13.99

0.000

0.000

bta-miR-335

−0.581

−1.496

6.95

0.000

0.020

-

-

-

-

-

bta-miR-2299-5p

−0.890

−1.853

3.76

0.001

0.028

-

-

-

-

-

bta-miR-125b

-

-

-

-

-

−0.563

−1.477

13.09

0.001

0.016

bta-miR-99b

-

-

-

-

-

−0.573

−1.488

11.43

0.001

0.012

bta-miR-125a

-

-

-

-

-

−0.574

−1.489

12.22

0.002

0.032

bta-miR-96

-

-

-

-

-

−0.606

−1.522

11.60

0.000

0.000

bta-miR-484

-

-

-

-

-

−0.709

−1.635

7.79

0.000

0.005

bta-miR-1388-5p

-

-

-

-

-

−0.749

−1.681

6.81

0.000

0.006

bta-miR-342

-

-

-

-

-

−0.830

−1.778

8.75

0.000

0.004

bta-miR-4863

-

-

-

-

-

−1.754

−3.373

7.94

0.000

0.000

bta-miR-1271

-

-

-

-

-

−2.262

−4.797

6.61

0.000

0.009

  1. 1Log2FC: log2 fold change; 2FC: fold change; 3logCPM: log2-counts per million; 4Benjaminin Hochberg FDR p-values.
  2. The miRNAs in bold are among core differentially expressed miRNAs which were found in both treatments.
  3. bta-miR-486 was also found to be differentially expressed at day + 7 as compared to day-14 in safflower treatment
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BMC Genomics

ISSN: 1471-2164

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